Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01178 ATGCCAACCCAAACTTTCTTTACCAGAGTTTCCAGAGTTTTCCACGACCATCCTTCTATTTCCAGGCTCCTCGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATATGCCGATGCTGGCCCAACCAATGGTGTACCCAGTATCGCTTCTACAGCCAATGTAGATGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCATTCACCCCATTATTGCCAAGTGTTACTTGTGGTACGGTGGAAGCCCGTAGCATTGTTGAACCAATTCGCAACCTTGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTTGATTATGACTACCTAGTGATAGCTGTGGGAGCACAAGTTAATACATTCAATACCCCTGGCGTTGTAGAGAATTGCCATTTCTTGAAGGAAGTAGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATACTTCATTTTGCTATTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGACTTTGTTAATGAGGACTTGGTTAAATTATATCCTGGACTACAGGAATTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTGATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTGTGGTCAACTGGTATCGGAACCCGTCCAATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAGTGGCTACGAGTTGAGGGATGTGACAATGTATATGCACTTGGTGACTGTGCTACTATAAATCAACGAAAAGTCATGGAGGATATTTCAGCCATATTTAGCAAGGCAGACAAAGACAATTCCGGGACACTTACAGTAAAAGAATTCCAAGAAGTCATTGATGACATATGTGAAAGATATCCTCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACAACATTGTGGATCTTTTAAAAGGGTCCAAAGGGGATGTGGCAAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACTGCGCAGGTGGCTGCGCAACAAGGTGCATATCTTGCCCATTGTTTTAACCGTATGGAAGAGTGTGAAAAGTATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGACGCCACCGCTTTCGGGCCTTTCGGTACAAACATCTTGGACAATTTGCACCATTGGGTGGAGAACAAACAGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGTACAAGAGCACTAGTGGTTACGGATTGGACGAGGCGATTTATTTTCGGGAGAGATTCGAGTCGCATATGA 1755 42.39 MPTQTFFTRVSRVFHDHPSISRLLVLVTVSGGSLVAYADAGPTNGVPSIASTANVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNLVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLQEFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRKVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKGDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECEKYPEGPLRFRGSGRHRFRAFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI* 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7297188 7302649 - CsaV3_1G011780.1 Csa01g01178 515675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01178 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Csa01g01178 584 SUPERFAMILY FAD/NAD(P)-binding domain 217 379 IPR036188 -
Csa01g01178 584 Gene3D - 49 415 - -
Csa01g01178 584 Gene3D - 426 583 - -
Csa01g01178 584 SMART efh_1 386 414 IPR002048 GO:0005509
Csa01g01178 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 385 IPR023753 GO:0016491
Csa01g01178 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Csa01g01178 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Csa01g01178 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Csa01g01178 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Csa01g01178 584 PANTHER NAD(P)H DEHYDROGENASE B2 3 584 - -
Csa01g01178 584 PANTHER NADH DEHYDROGENASE 3 584 IPR045024 GO:0003954|GO:0006116
Csa01g01178 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Csa01g01178 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01178 Csa-Chr1:7297188 Csa06g01418 Csa-Chr6:12102922 2.40E-13 dispersed
Csa06g01045 Csa-Chr6:8563267 Csa01g01178 Csa-Chr1:7297188 0 transposed
Csa01g01178 Csa-Chr1:7297188 Csa06g03594 Csa-Chr6:29044485 4.59E-12 wgd
Csa01g01178 Csa-Chr1:7297188 Csa07g00414 Csa-Chr7:3027034 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01178 K03885 - csv:101204145 1172.92