Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01182 ATGAACGATCTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAGCAACAAGCATATCTGGACAGCATGGAGGCTGGAAGTGAGAGTGTAAATTTGGACAGATTCTTTGAGGATGTTGAAAATGTTAAAGATGACATGAAACAAGTGGAGAATTTGTACAAGAAATTGCAGCAGGCTAATGAGGAGTGTAAGGTTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGACTGACGTTGCTCAAGTTCTCAAGCGAGTCAAATTGATCAAAGGAAAACTCGAAGCTCTTGAGCGTTCTAATGCCGCTCACCGTGGCCTCCCCGGTTGCGGCCCTGGCTCTTCTGCTGACCGAACTCGAACCTCTGTTGTCAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAATGCCGAGTATAAAGAAACCGTCGAGCGAAGGTACTTCACTGTGACAGGGCAGAAAGCAAATGAAGAAACAATAGAGAATTTAATATCAAGTGGGGAAAGTGAGAGCTTTCTACAGAAGGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAGGAAATAGAGAAGAATTTGATAGAGCTGCATCAGATTTTCTTGGACATGGCAGCTTTAGTTGAAGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTCGCGCATGCTAACTCGTTTGTTAGAAGAGGAACAGAGCAACTCCAAGAAGCCAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATACTTTTGGGAGCTATTCTTATTATCATTCTTCTCTTCCCACTATTAACTTCAATTTTACCTCATTTGTTGTAG 912 43.42 MNDLFSNSFKKYTDLKQQAYLDSMEAGSESVNLDRFFEDVENVKDDMKQVENLYKKLQQANEECKVVHNAKTMKELRGRMETDVAQVLKRVKLIKGKLEALERSNAAHRGLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAILLGAILIIILLFPLLTSILPHLL* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7322149 7324122 + CsaV3_1G011820.1 Csa01g01182 515679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01182 303 CDD SNARE_syntaxin1-like 202 264 - -
Csa01g01182 303 CDD SynN 33 190 IPR006011 GO:0016020
Csa01g01182 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa01g01182 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Csa01g01182 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Csa01g01182 303 SMART tSNARE_6 198 265 IPR000727 -
Csa01g01182 303 Gene3D - 193 295 - -
Csa01g01182 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Csa01g01182 303 PANTHER SYNTAXIN-124-RELATED 6 294 - -
Csa01g01182 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Csa01g01182 303 Coils Coil 33 70 - -
Csa01g01182 303 PANTHER SYNTAXIN 6 294 IPR045242 -
Csa01g01182 303 Pfam SNARE domain 240 291 IPR000727 -
Csa01g01182 303 Gene3D - 33 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01182 Csa-Chr1:7322149 Csa06g02728 Csa-Chr6:23853120 2.44E-115 dispersed
Csa01g01182 Csa-Chr1:7322149 Csa03g03501 Csa-Chr3:31360235 5.05E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01182 K08486 - csv:101217140 549.666