Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01182 | ATGAACGATCTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAGCAACAAGCATATCTGGACAGCATGGAGGCTGGAAGTGAGAGTGTAAATTTGGACAGATTCTTTGAGGATGTTGAAAATGTTAAAGATGACATGAAACAAGTGGAGAATTTGTACAAGAAATTGCAGCAGGCTAATGAGGAGTGTAAGGTTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGACTGACGTTGCTCAAGTTCTCAAGCGAGTCAAATTGATCAAAGGAAAACTCGAAGCTCTTGAGCGTTCTAATGCCGCTCACCGTGGCCTCCCCGGTTGCGGCCCTGGCTCTTCTGCTGACCGAACTCGAACCTCTGTTGTCAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAATGCCGAGTATAAAGAAACCGTCGAGCGAAGGTACTTCACTGTGACAGGGCAGAAAGCAAATGAAGAAACAATAGAGAATTTAATATCAAGTGGGGAAAGTGAGAGCTTTCTACAGAAGGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAGGAAATAGAGAAGAATTTGATAGAGCTGCATCAGATTTTCTTGGACATGGCAGCTTTAGTTGAAGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTCGCGCATGCTAACTCGTTTGTTAGAAGAGGAACAGAGCAACTCCAAGAAGCCAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATACTTTTGGGAGCTATTCTTATTATCATTCTTCTCTTCCCACTATTAACTTCAATTTTACCTCATTTGTTGTAG | 912 | 43.42 | MNDLFSNSFKKYTDLKQQAYLDSMEAGSESVNLDRFFEDVENVKDDMKQVENLYKKLQQANEECKVVHNAKTMKELRGRMETDVAQVLKRVKLIKGKLEALERSNAAHRGLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAILLGAILIIILLFPLLTSILPHLL* | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7322149 | 7324122 | + | CsaV3_1G011820.1 | Csa01g01182 | 515679 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01182 | 303 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Csa01g01182 | 303 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
Csa01g01182 | 303 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Csa01g01182 | 303 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
Csa01g01182 | 303 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
Csa01g01182 | 303 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Csa01g01182 | 303 | Gene3D | - | 193 | 295 | - | - | |
Csa01g01182 | 303 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
Csa01g01182 | 303 | PANTHER | SYNTAXIN-124-RELATED | 6 | 294 | - | - | |
Csa01g01182 | 303 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
Csa01g01182 | 303 | Coils | Coil | 33 | 70 | - | - | |
Csa01g01182 | 303 | PANTHER | SYNTAXIN | 6 | 294 | IPR045242 | - | |
Csa01g01182 | 303 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
Csa01g01182 | 303 | Gene3D | - | 33 | 160 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01182 | Csa-Chr1:7322149 | Csa06g02728 | Csa-Chr6:23853120 | 2.44E-115 | dispersed | |
Csa01g01182 | Csa-Chr1:7322149 | Csa03g03501 | Csa-Chr3:31360235 | 5.05E-123 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01182 | K08486 | - | csv:101217140 | 549.666 |