Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01213 ATGAGTTGCATCTGCTTCGGTTCCTCTACTTTGGAGAAGGAACGAATCTCTACACGTGCTGATAAGGAATTGGACATCGACTTGCTTGAGAATGTAAAACAAATCTCCTTCAATGAATTAAGATCTGCTTCGGACGACTTCCATTCGAACAATAGAATTGGACGAGGAGGTTTTGGAACTGTTTACAAGGGCACATTAAGGAATGGAGTACAAGTTGCGATAAAGAAACTCTCTATAGAGTCTAAGCAAGGCGCTCGCGAATTTTTGACAGAGATCAAAACCATTTCAAATATTAGGCATCCTAACCTTGTTGAGTTAATTGGATGCTGTTCTCAAAAAGCTAGCCGAATCTTGGTATATGAATATCTGGAAAACAACAGTCTCGACCATGCTTTGTTAGATCCTAAAAAAATAAGCGTCCATCTGGATTGGAGGAAGAGGTCCTCTATTTGCATTGGTACTGCTAGGGGTCTTCAATTTCTTCACGAGGAAGCTGTTCCACATATTGTGCATAGAGACATCAAGGCTAGTAATATTCTCCTTGATAAAGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATTACTCACATTAGCACAAGAATTGCAGGAACAACTGGTTATTTGGCTCCAGAATATGCATTGGGAGGTCAGCTAACTCTGAAGGCCGATGTCTATAGCTTTGGAGTCCTCATTCTTGAACTAGTTAGTGGTAAACGTAGCAGTACAGTTTTTGGGGTAGAAATATCAATACTCTTGCTGGGAAGGGTGTGGGAGTTATATGAAGAAGGAAAACTCTTGGATATAGTGGATCCTAGACTAGGAGATTACCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTTTGCACACAAGCAGCTGCAAATCGACGGCCAGTGATGAGCCAAGTCATTGACATGCTCACAAAGAATAACAAGCTGAACGAGAAGCTACTTACTGCCCCAGGGTTCTACGGAGGCTTGGGGACTAGTGACATTCCTTCAGTGAGCAAGAAAACCTCAAACGCTTCCAGTAGCAACGAGATGAGCTTTGCAGGCATCTCCATAACTAAAATCACCCCCAGATGA 1116 42.11 MSCICFGSSTLEKERISTRADKELDIDLLENVKQISFNELRSASDDFHSNNRIGRGGFGTVYKGTLRNGVQVAIKKLSIESKQGAREFLTEIKTISNIRHPNLVELIGCCSQKASRILVYEYLENNSLDHALLDPKKISVHLDWRKRSSICIGTARGLQFLHEEAVPHIVHRDIKASNILLDKDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLILELVSGKRSSTVFGVEISILLLGRVWELYEEGKLLDIVDPRLGDYPQEEVLRYMKVALFCTQAAANRRPVMSQVIDMLTKNNKLNEKLLTAPGFYGGLGTSDIPSVSKKTSNASSSNEMSFAGISITKITPR* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7524736 7536805 - CsaV3_1G012130.1 Csa01g01213 515710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01213 371 SMART serkin_6 47 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01213 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Csa01g01213 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 353 - -
Csa01g01213 371 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Csa01g01213 371 Pfam Protein kinase domain 47 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01213 371 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01213 371 SUPERFAMILY Protein kinase-like (PK-like) 29 317 IPR011009 -
Csa01g01213 371 PANTHER - 1 353 - -
Csa01g01213 371 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Csa01g01213 371 CDD STKc_IRAK 53 319 - -
Csa01g01213 371 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01213 Csa-Chr1:7524736 Csa03g03082 Csa-Chr3:28958607 5.48E-151 dispersed
Csa01g01213 Csa-Chr1:7524736 Csa04g00800 Csa-Chr4:5599656 2.74E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77793 PF00069 Pkinase 2.90E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01213 - - csv:101207026 718.383