Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01233 ATGGCCCCATTCAAGCTCCAATTCCTCCTTCTCTCTTTCCCCCTCCTTCTCTTCTCTTCCATTTCCTCCCTTGATTTCCTCTTCAATCGATTCAATTCAACCAACATCTCCCTCTACGGCAACGCCACCATCGATTCCTCTTTCATCGCTCTCACCAACCAAACCGGTTTCTCCATCGGCCGTGCTCTCTTCCCTTCCAAAATTCCCACTAAATCCCCCAATTCCTCTTCCATCCTCCCTTTCTCCACTTCCTTCATCTTCGCTATGGCCCCATACAGGGACGTCCTTCCTGGGCACGGCTTAGTTTTCATTTGCGTACCGACTACTGGAATCGAAGGAACTTCTGCTGCTCAGAATTTGGGCTTTCTTAACTTCACCCTTAATGGAAACCCCAATAACCATGTCTTTGGAGTTGAGTTCGATGTTTTTGAGAATGAGGAATTCAGCGATCCCGATGATAATCATGTCGGAATCAATTTGAATTCCTTGACGTCTTTTATCACCGAAGAAGCTGGGTTTTGGTCTGACGGTGGTCCGAATGCGGCGGGTACGCTCAACAGACTTAGGCTTAATAGCGGCGAAAATTATCAGGTTTGGATTGACTATTCCGATTTCAGGATGAATGTTACGATGGCTCCGGCAGGGATGAAGAAGCCGCGGCGACCTTTGATTAATACGTCTCTGAATCTCTCTGGAATTTTCATGGATGAAATGTATATGGGGTTCACGAGTTCAACAGGACAGTTGGTTCAAGGTCATAACATTTTAGCTTGGAGTTTCAGTAACACTAATTTTTCGTTGAGTGAGAGTTTGATCACCACTGGATTACCCTCCTTCCTCCTCCCAAAAGACCCAATTACCAAATCGAAGTGGTTCATCGCCGGAGTGACAGCCGGCGGATTCCTCGTCGTTTGTTTCTTCGCAACGATTTTAGGGATTTTGATAGCCGACTACCGGAGAAAAGCGAGGTTAAGAGCCGAAATGGAAGATTGGGAATTAGAGTATTGGCCACACCGACTGACATATCAAGAAATCGAATCGGCAACGAAAGGATTTGCAGAAGAAAACGTGATAGGAATCGGAGGGAATGGGAAAGTACATAAAGGGATTTTGGCCGGAGGAAGTTCAGAAGTTGCCGTGAAACGAATCTCTCACGATAACGACGGGATGCGTGAATTCTTAGCTGAAATCTCAAGTATCGGAAGATTAAAACACAGAAATCTTGTAAGTTTGAAGGGTTGGTGTAAAAAAGAGAAGGGAAATTTCTTGCTGGTTTACGATTTCATGGAAAATGGAAGCTTAGACAAATGGGTATTTGATTGTGATGAGAGAAACATGTTGAGTTGGGAGGATCGAATCAGAGTATTGAAGAACGTAGCGACAGGGGTTTTGTATTTACACGAAGGATGGGAATCAAAGGTTCTTCACAGAGACATAAAAGCCAGCAATGTGTTGTTAGACAAAGACATGAATGGAAGGCTAGGGGATTTCGGGTTAGCTCGAGTCCACGGTCACGGTCAAGTTGCAAGCACGACTCGAATCGTTGGCACAATGGGTTACATAGCACCCGAGTTGATTCGAACGGGACGAGCCTCAACTCAATCCGACGTGTTTGGTTTTGGGGTATTGATTTTGGAAGTGATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCGCCATTGGTGGATTGGGTTCGCCAGTTGGCCATTGAAGGGAAAATTACGGCAGCGCTTGACAGCCGGCTGAGGAAGAAGGGTGAGTGGAACGAGGAGGAAGTGGGGAGAGTATTACATTTGGGACTGGTGTGTGCGCATGTTGACCCAAACAATCGGCCGACGATGAGGCAAATTGTGAAAGTTTTGGAAGGGAAGATTGAGTTGGATGAGAGTGAGAGTGAGAGTATGAATGCTTATCTGCTTCAAAGATTGAAGTCAGAAGGAATGTTGTGTGATTCTGGTGTTGGTTTTGGGAAAAATCTGCATCCAACATTTGAGGACTTTCTACAATCTTATTCAACTTCACTCTCTTGGACCAATTCTTCTGTCACTGGCAGGTGA 2058 45.72 MAPFKLQFLLLSFPLLLFSSISSLDFLFNRFNSTNISLYGNATIDSSFIALTNQTGFSIGRALFPSKIPTKSPNSSSILPFSTSFIFAMAPYRDVLPGHGLVFICVPTTGIEGTSAAQNLGFLNFTLNGNPNNHVFGVEFDVFENEEFSDPDDNHVGINLNSLTSFITEEAGFWSDGGPNAAGTLNRLRLNSGENYQVWIDYSDFRMNVTMAPAGMKKPRRPLINTSLNLSGIFMDEMYMGFTSSTGQLVQGHNILAWSFSNTNFSLSESLITTGLPSFLLPKDPITKSKWFIAGVTAGGFLVVCFFATILGILIADYRRKARLRAEMEDWELEYWPHRLTYQEIESATKGFAEENVIGIGGNGKVHKGILAGGSSEVAVKRISHDNDGMREFLAEISSIGRLKHRNLVSLKGWCKKEKGNFLLVYDFMENGSLDKWVFDCDERNMLSWEDRIRVLKNVATGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVASTTRIVGTMGYIAPELIRTGRASTQSDVFGFGVLILEVMCGRRPIEEGKPPLVDWVRQLAIEGKITAALDSRLRKKGEWNEEEVGRVLHLGLVCAHVDPNNRPTMRQIVKVLEGKIELDESESESMNAYLLQRLKSEGMLCDSGVGFGKNLHPTFEDFLQSYSTSLSWTNSSVTGR* 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7648891 7651633 + CsaV3_1G012330.1 Csa01g01233 515730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01233 685 Gene3D - 21 270 - -
Csa01g01233 685 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 268 IPR013320 -
Csa01g01233 685 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Csa01g01233 685 PANTHER - 7 677 - -
Csa01g01233 685 Pfam Protein kinase domain 353 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01233 685 SUPERFAMILY Protein kinase-like (PK-like) 330 622 IPR011009 -
Csa01g01233 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Csa01g01233 685 CDD STKc_IRAK 358 623 - -
Csa01g01233 685 Pfam Legume lectin domain 24 265 IPR001220 GO:0030246
Csa01g01233 685 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01233 685 CDD lectin_legume_LecRK_Arcelin_ConA 26 263 IPR001220 GO:0030246
Csa01g01233 685 ProSiteProfiles Protein kinase domain profile. 352 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01233 685 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 7 677 - -
Csa01g01233 685 Gene3D Transferase(Phosphotransferase) domain 1 429 644 - -
Csa01g01233 685 Gene3D Phosphorylase Kinase; domain 1 316 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01233 Csa-Chr1:7648891 Csa07g00449 Csa-Chr7:3219558 0 dispersed
Csa01g01233 Csa-Chr1:7648891 Csa03g03162 Csa-Chr3:29326367 2.34E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77794 PF00069 Pkinase 5.00E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01233 - - csv:101222577 1334.7