Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01236 ATGGAGGAAGATCCTAATTCTTGGTTAAGAAGAACTAATTTTTCTCACACAATATGCTATCGTTTAGAGTCCTTAAGTTTAGCTTCCTTTCCTGTCACCACTCAGCCACGTCCCAAATCACTTGTGCAATCAAAACCGAACCCTCGTTATAATCTAACAAAGCAGAGGTCTTTATCTCCTTCTCCACAAACGAATCTCTCCAATGCATTTAAGGATGCACGTATCAATCAGAAGCGATTTTCGACTCCACAGCCTCAGAGAAAAGAACCTCTAAAAGAGAAGAGTAAAAGGCTGTTTTGTAAAAGAGCCAAAGTGCAGAATTCCCTCAAGGAAGAGAAGTTAAAAGGACCTTTGAGGAATCTTGTCTCTTTTAAAGGTTGCGAGAAGTTCAAATTCAAGGAGTCTTCTTGGAGTAAGCTTTTTGAGCACGGTGGAGGGAAGGTCACGGCTGTTGAAGCTGTAGACGAATTGTCAATTGATCTGTCTAAGTTGATGTTTGGACATAGATTTGCTTTTGGAGCTCATAGTCGACTTTACCACGGAATTTATGAAGATAAAGTTGTTGCTGCTAAGATGATCAATCTACCAGCCAATGATGAAAATGGCGATCTCGCAGGACGCTTAGTAAAGCAATTTGGTAGAGAAGTAACCCTTTTATCTCGTCTTCACCATCCCAATGTTATAAAGTTAGTAGCAGCTGTGAAAAAGCCACCTGTTTATTGCATCATCACTGAGTATCTACCTCAGGGTTCCTTGAGAGCATATCTTCACAAACTAGAGAAAAAATCTCTCCCATTGCAAAAACAAATTGCCATTGCCTTAGACATTGCTCGTGGGATGGAATACATTCACTCACAAGGTGTCATTCATCGGGATCTGAAACCTGAAAACATTCTTATTGATCAAGACTTTTGTCTAAAGATCGCTGATTTTGGCATTGCTTGTGAGGAGGCACATTGTGATACACTGGCCGAGGACCCCGGAACGTTCCGTTGGATGGCCCCGGAAATGATCAAACGCAAACCCTATGGAAGAAAGGTTGATATCTACAGCTTTGGACTATTGCTATGGGAATTGGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCAATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTCATACCGAGCGAGTGTCCTCCAGTGATACGGGTGTTAATCGAGCAATGCTGGTGCGAGAAACCGGAAAAGAGGGTGGAGTTTTGGCAGGTGGTGAAAGTGTTGGAGCAAGTTGAGAGTTGTATTGGGGGAGATGGTACATTGATGACGAGTGTAGAGTTAAAGGGGAAGGCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATTCAGAAGCTTGGTCCTCTTAATTCTCATAATTCTCTCAACTCCTCCAGATCTAAATTCATATGA 1431 41.93 MEEDPNSWLRRTNFSHTICYRLESLSLASFPVTTQPRPKSLVQSKPNPRYNLTKQRSLSPSPQTNLSNAFKDARINQKRFSTPQPQRKEPLKEKSKRLFCKRAKVQNSLKEEKLKGPLRNLVSFKGCEKFKFKESSWSKLFEHGGGKVTAVEAVDELSIDLSKLMFGHRFAFGAHSRLYHGIYEDKVVAAKMINLPANDENGDLAGRLVKQFGREVTLLSRLHHPNVIKLVAAVKKPPVYCIITEYLPQGSLRAYLHKLEKKSLPLQKQIAIALDIARGMEYIHSQGVIHRDLKPENILIDQDFCLKIADFGIACEEAHCDTLAEDPGTFRWMAPEMIKRKPYGRKVDIYSFGLLLWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPSECPPVIRVLIEQCWCEKPEKRVEFWQVVKVLEQVESCIGGDGTLMTSVELKGKASWEDHKKGLKHWIQKLGPLNSHNSLNSSRSKFI* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7677514 7681116 - CsaV3_1G012360.1 Csa01g01236 515733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01236 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Csa01g01236 476 MobiDBLite consensus disorder prediction 34 84 - -
Csa01g01236 476 SUPERFAMILY Protein kinase-like (PK-like) 152 420 IPR011009 -
Csa01g01236 476 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 446 - -
Csa01g01236 476 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 446 - -
Csa01g01236 476 SMART serkin_6 164 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01236 476 Pfam Protein tyrosine and serine/threonine kinase 168 420 IPR001245 GO:0004672|GO:0006468
Csa01g01236 476 PRINTS Tyrosine kinase catalytic domain signature 244 257 IPR001245 GO:0004672|GO:0006468
Csa01g01236 476 PRINTS Tyrosine kinase catalytic domain signature 282 300 IPR001245 GO:0004672|GO:0006468
Csa01g01236 476 PRINTS Tyrosine kinase catalytic domain signature 328 338 IPR001245 GO:0004672|GO:0006468
Csa01g01236 476 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672|GO:0006468
Csa01g01236 476 PRINTS Tyrosine kinase catalytic domain signature 391 413 IPR001245 GO:0004672|GO:0006468
Csa01g01236 476 MobiDBLite consensus disorder prediction 34 93 - -
Csa01g01236 476 CDD STKc_MAP3K-like 171 420 - -
Csa01g01236 476 ProSiteProfiles Protein kinase domain profile. 164 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01236 476 Gene3D Phosphorylase Kinase; domain 1 152 247 - -
Csa01g01236 476 Gene3D Transferase(Phosphotransferase) domain 1 248 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01236 Csa-Chr1:7677514 Csa06g03473 Csa-Chr6:28479047 1.01E-103 dispersed
Csa05g00217 Csa-Chr5:1299747 Csa01g01236 Csa-Chr1:7677514 6.24E-25 dispersed
Csa01g01236 Csa-Chr1:7677514 Csa06g03630 Csa-Chr6:29264801 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77795 PF07714 PK_Tyr_Ser-Thr 1.30E-58 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01236 - - csv:101222817 953.74