Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01260 ATGCTTCTCCAACCACTTTTTCTTCTCTTCTTCTTCTTCACCTTCTTCTCTAACCCTTCTCTTCTTTCCTTCTCTCTAACCCAAGAAGGCCTCTATCTCCACACCATCAAGCTTTCTCTCGACGACCCAGATTCCGCTCTCCACTCATGGAACGACCGCGACGATACTCCCTGTTCCTGGTTCGGCGTCTCTTGCGACCCACAAACCAACTCCGTCCACTCTCTCGACCTCTCCAGCACTAACATCGCCGGCCCATTTCCTTCCCTTCTTTGCCGCCTCCAGAATCTTTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCAACCTGTACCAGTCTCCACCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGAGCTTCCGGCCTCGATTTCTGATCTCCCCAACCTTCGTTACTTGGATTTGACTGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCAGAAGTTGGAAGTTCTGTCTCTTGTTTATAATCTTCTTGATGGGCCTATGCCGGCGTTTCTCGGCAACATTACGTCGTTGAAGATGTTGAACCTGTCTTATAACCCTTTTGAGCCCAGTCGGATCCCGACGGAGTTTGGGAATTTGATGAATCTTGAGGTGCTCTGGCTTACTCAGTGTAATTTGGTTGGGGAAATTCCGGAGTCTCTCGGTCGGTTGAAGCGGCTTACTGATTTGGACTTGGCGTTTAATAACCTTGATGGATCGATTCCGAAGTCGCTCATGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACAGGAGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGTGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTGGAAGGGAAGTTACCGGAAAGCATTGCCAACTCCCCGGGTCTATACGAACTCAGACTGTTCAGTAACCGGCTCACCGGTGAGTTACCGTCAAATCTTGGAAAGAACTCGCCAATGAAATGGATTGATGTTTCTAACAACCAGTTTACGGGTAAAATCCCCGGGAATTTATGTGAAAAGGGTGAGTTGGAGGAGCTTCTAATGATCAATAACCAATTTTCCGGCGAGATTCCGGCGAGTTTAGGTTCGTGTGAGAGTCTTACAAGAGTGCGATTGGGTTATAATCAGTTTTCCGGCGAAGTACCGGCCGGATTTTGGGGTCTCCCACATGTGTATCTGTTAGAGCTGGTGAGCAACTCGTTTTCTGGGAAGATTTCAGATGCCATTGCCACTGCTAAGAACCTTTCCATTTTCATTATCTCTAAGAACAACTTCACCGGCATGTTACCGGCGGAGTTGGGCGGGCTAGAAAACCTTGTGAAGTTGCTAGCAACAGATAACAAACTCAATGGATCATTACCAGAGAGTCTTACGAATCTTAGGCATCTGTCGAGTTTGGATCTTCGAAATAATGAACTCTCTGGGGAACTTCCTAGTGGAATCAAGTCATGGAAGAATCTCAACGAACTCAATTTAGCTAACAATGAATTCACCGGCGAAATCCCTGAAGAAATCGGAAATCTGCCTGTTCTTAATTACTTAGATCTGTCTGGGAATCTGTTTTATGGGGATGTCCCTCTTGGGTTACAAAATTTGAAGCTCAATCTTCTCAATTTATCGAACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCCAAGGAAATCTACAGAAATAGCTTTTTAGGGAATCCAGATTTGTGTGGACATTTTGAAAGTTTGTGCAATAGCAAAGCTGAAGCTAAAAGCCAAGGCTCTCTCTGGTTACTCCGCTCGATCTTCATCCTTGCGGGTTTCGTGTTTATCGTCGGCGTCATCTGGTTTTACCTCAAATACAGGAAGTTTAAGATGGCAAAGAGAGAAATAGAGAAGAGTAAATGGACATTGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGATTGTCTTGATGATGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGCGAGGCTGTTGCAGTGAAGAAGCTGTTCGGAGGATTGAGGAAAGAAGGTGAAAAAGGCGATATCGAGAAAGGTCAAGTTCAAGACAATGCCTTTGAAGCCGAAATTGATACTTTGGGAAAGATTAGGCACAAGAACATCGTGAAATTATGGTGCTGTTGTGTTACAAGAGACTACAAGCTTCTAGTGTACGAATATATGCCTAATGGAAGCTTGGGTGATTTGCTTCATAGTAGTAAAAAAGGACTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCGGAAGGACTTTCTTATCTTCATCACGATTGCGTCCCTCCGATCGTTCATCGAGACGTGAAGTCAAACAATATCTTGTTGGATGGCGATTGCGGAGCACGGTTGGCCGATTTTGGTGTAGCTAAAGTCATTGATTCAACCGGAAAAGGGCCTAAATCCATGTCCGTTATCGCAGGATCTTGTGGTTACATCGCTCCTGAGTATGCTTATACACTCCGAGTGAACGAAAAAAGCGACATATACAGTTATGGCGTGGTGATTCTCGAGCTAATAACCGGGAGGCTTCCAGTCGATCCAGAATTCGGGGAGAAGGACTTGGTGAAATGGGTGTGTTACACATTGGATCAAGACGGGATCGATCAAGTTATCGACCGGAAACTGGATAGCTGTTACAAAGAAGAGATATGCAGAGTCCTTAACATTGGGTTGCTCTGCACCAGCCCTCTACCAATCAACCGTCCATCCATGCGTAAAGTGGTGAAAATGCTACAAGAAGTAGGGGCAGAGAACCAATTGAAAAGCAACAGTAAAGATGGAAAGTTAACTCCTTACTACTATGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 3003 44.99 MLLQPLFLLFFFFTFFSNPSLLSFSLTQEGLYLHTIKLSLDDPDSALHSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSSTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISTCTSLHHLDLSQNLLTGELPASISDLPNLRYLDLTGNNFSGDIPESFARFQKLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFEPSRIPTEFGNLMNLEVLWLTQCNLVGEIPESLGRLKRLTDLDLAFNNLDGSIPKSLMELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGVIPDELCQLPLESLNLYENKLEGKLPESIANSPGLYELRLFSNRLTGELPSNLGKNSPMKWIDVSNNQFTGKIPGNLCEKGELEELLMINNQFSGEIPASLGSCESLTRVRLGYNQFSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGMLPAELGGLENLVKLLATDNKLNGSLPESLTNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFYGDVPLGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFLGNPDLCGHFESLCNSKAEAKSQGSLWLLRSIFILAGFVFIVGVIWFYLKYRKFKMAKREIEKSKWTLMSFHKLDFSEYEILDCLDDDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGLRKEGEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDCGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSYGVVILELITGRLPVDPEFGEKDLVKWVCYTLDQDGIDQVIDRKLDSCYKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNSKDGKLTPYYYEDASDQGSVA* 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7844689 7848742 + CsaV3_1G012600.1 Csa01g01260 515757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01260 1000 Pfam Protein kinase domain 690 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01260 1000 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Csa01g01260 1000 Gene3D Transferase(Phosphotransferase) domain 1 775 993 - -
Csa01g01260 1000 SMART LRR_sd22_2 93 110 - -
Csa01g01260 1000 SMART LRR_sd22_2 117 143 - -
Csa01g01260 1000 SMART LRR_sd22_2 238 264 - -
Csa01g01260 1000 SMART LRR_sd22_2 501 530 - -
Csa01g01260 1000 SMART serkin_6 687 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01260 1000 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Csa01g01260 1000 Gene3D Phosphorylase Kinase; domain 1 652 774 - -
Csa01g01260 1000 ProSiteProfiles Protein kinase domain profile. 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01260 1000 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 980 - -
Csa01g01260 1000 SMART LRR_typ_2 286 310 IPR003591 -
Csa01g01260 1000 SMART LRR_typ_2 93 117 IPR003591 -
Csa01g01260 1000 SMART LRR_typ_2 141 164 IPR003591 -
Csa01g01260 1000 SMART LRR_typ_2 501 524 IPR003591 -
Csa01g01260 1000 SMART LRR_typ_2 189 213 IPR003591 -
Csa01g01260 1000 SMART LRR_typ_2 238 262 IPR003591 -
Csa01g01260 1000 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
Csa01g01260 1000 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Csa01g01260 1000 SUPERFAMILY Protein kinase-like (PK-like) 678 967 IPR011009 -
Csa01g01260 1000 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 12 980 - -
Csa01g01260 1000 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Csa01g01260 1000 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 475 505 IPR000225 GO:0005515
Csa01g01260 1000 Gene3D Ribonuclease Inhibitor 190 262 IPR032675 -
Csa01g01260 1000 Gene3D Ribonuclease Inhibitor 263 333 IPR032675 -
Csa01g01260 1000 SUPERFAMILY RNI-like 74 583 - -
Csa01g01260 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Csa01g01260 1000 MobiDBLite consensus disorder prediction 978 1000 - -
Csa01g01260 1000 Pfam Leucine Rich Repeat 119 140 IPR001611 GO:0005515
Csa01g01260 1000 Gene3D Ribonuclease Inhibitor 336 620 IPR032675 -
Csa01g01260 1000 SUPERFAMILY L domain-like 312 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01260 Csa-Chr1:7844689 Csa02g02250 Csa-Chr2:20181979 0 dispersed
Csa04g00403 Csa-Chr4:2466393 Csa01g01260 Csa-Chr1:7844689 0 dispersed
Csa03g00702 Csa-Chr3:6319874 Csa01g01260 Csa-Chr1:7844689 0 transposed
Csa07g00312 Csa-Chr7:2331519 Csa01g01260 Csa-Chr1:7844689 0 transposed
Csa01g01260 Csa-Chr1:7844689 Csa06g03657 Csa-Chr6:29405707 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77796 PF00069 Pkinase 1.20E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01260 - - csv:101213542 1945.24