Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01274 ATGGAGAATGATTCTTCTTCCGCCATGGATATCAAAGGTACTCCCACTTACGACTCCAAATACTTACTCTACAATGTTCTTGGCAGCTTCTTCGAGGTCTCCGCCAAATACTCCCCTTCAATTCAACCTGTTGGACGTGGTGCTTACGGCATTGTTTGTTGTACGACTAATTCCGAGACAAAAGAAGAGGTTGCGATTAAGAAGATTGGGAATGCTTTTGATAATAGGATTGATGCTAAGAGGACGCTTCGTGAGATTAAACTGCTTTGCCATATGGATCATGACAATATTATAAAAATCAAAGATATTATTCCACCTCCAGATAAGGAGAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACTTACACCAGATCATTCGCTCTTCCCAGGCTTTGACAGACGATCACTGTCAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACATTCTGCAAATGTCTTGCACCGAGATCTTAAACCAAGCAACCTGCTCCTTAATGCAAATTGTGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACGGAATATGTTGTAACACGATGGTATCGAGCCCCTGAGCTACTGCTCAACACTTCTGAATACACTGCAGCGATAGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTTAGGAGGGAGCCACTGTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACTGAGTTGCTAGGTTCACCTGATGATTCAGATCTCGGGTTTCTTAGAAGTGATAACGCAAGGAAGTATGTTAAGCAACTTCCTCATTTCCCAAAACAACCGCTGATCGAAAAGTTCCCAGATCTTCCTCCACTGGCTGTTGATCTTGCAGAGAGGATGCTACTCTTTGATCCAAGCAAGAGAATAACTGTGGAGGAGGCCATGAATCACCCATATATAGTAAGTCTTCATGAGATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTTGAACAGGCATCCTTGGATGAAGAAGACATAAAAGAACTTATATGGAGGGAGTCTATCAAGTTCAATCCGAATCACATTTAG 1113 41.24 MENDSSSAMDIKGTPTYDSKYLLYNVLGSFFEVSAKYSPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPDKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESIKFNPNHI* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7989598 7993512 + CsaV3_1G012740.1 Csa01g01274 515771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01274 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 17 369 - -
Csa01g01274 370 Gene3D Phosphorylase Kinase; domain 1 21 361 - -
Csa01g01274 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 369 - -
Csa01g01274 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Csa01g01274 370 SMART serkin_6 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01274 370 SUPERFAMILY Protein kinase-like (PK-like) 41 330 IPR011009 -
Csa01g01274 370 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Csa01g01274 370 Gene3D Transferase(Phosphotransferase) domain 1 122 351 - -
Csa01g01274 370 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01274 370 Pfam Protein kinase domain 41 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01274 370 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01274 Csa-Chr1:7989598 Csa06g00083 Csa-Chr6:532725 0 dispersed
Csa01g01274 Csa-Chr1:7989598 Csa05g00251 Csa-Chr5:1523550 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77797 PF00069 Pkinase 8.70E-70 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01274 K04371 - csv:101218403 747.273