Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01277 ATGGGTTGTTTTCGTTGTACCGGTTCATCCAGCAAGAAATCGGAGGATATCGAACAAAAAGACCCCAATACCTTCAATTCCAAAACCCATAAGCCCGATGATCGAACCCCTTCAGATAAAGCCAAAGTTATTTCAAATTTGGTGAAGAGGGATTCTGATGTGAAGGTGGTTGTGTCTAAAAATGACCAATTGGCTTTAGATGTAAAGAAATTGAATTTGAAAAATGAGGTTTCTGAAGAAGGAGAAGCCAATGGCCGTGCTAAGACGTTTACATTTGAAGAACTTGCAGCCGCTACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGGAAAAAGTTAATGAGGTTGTAGCAATTAAACAGCTAGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTGGAAGTTTTGACTTTAAGTCTAGCTGATCATCCCAACCTTGTAAAACTTATTGGCTTTTGTGCTGAAGGGGATCAGAGATTATTGGTTTACGAATATATGCCATTGGGATCATTGGAAAACCATTTACACGATCTTCGACCTGGTGCCAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGGTTGGAGTATTTGCATGAGAAGATGAAGCCCCCGGTTATATATCGTGATTTGAAATGCTCAAACATTTTACTCGGTGAAGGATATCATCCAAAGCTATCTGATTTTGGATTGGCTAAAGTAGGTCCTAGTGGGGATAAAACCCACGTTTCAACCAGGGTTATGGGCACATATGGGTATTGCGCTCCAGATTATGCAATGACAGGCCAGCTGACATTCAAATCAGATATTTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCGGAGCAAAATCTTGTGGCTTGGGCGCGACCCATGTTCCGAGACCGAAAAAAGTTCTCACAAATGGTTGATCCAATGCTCCAAGGACATTATCCTGTGAGAGGATTATACCAATCTCTAGCCATAGCCGCAATGTGTGTTCAGGAGCAACCAAATATGCGACCAGTCATAACTGATGTTGTAACAGCTTTAAACTACCTAGCATCCCAGAAATACGATCCCCAGACTCAACCAAACCAAAACTCCCAAAAGAGACCATCTTCTCATAAAATGGAACGGGGTGATGATAAGAAAGAAACTTCAGACAACGATGAGTCAGAGAGAGAGTGA 1266 42.1 MGCFRCTGSSSKKSEDIEQKDPNTFNSKTHKPDDRTPSDKAKVISNLVKRDSDVKVVVSKNDQLALDVKKLNLKNEVSEEGEANGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLEKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPMFRDRKKFSQMVDPMLQGHYPVRGLYQSLAIAAMCVQEQPNMRPVITDVVTALNYLASQKYDPQTQPNQNSQKRPSSHKMERGDDKKETSDNDESERE* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8023792 8027266 + CsaV3_1G012770.1 Csa01g01277 515774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01277 421 SUPERFAMILY Protein kinase-like (PK-like) 88 395 IPR011009 -
Csa01g01277 421 MobiDBLite consensus disorder prediction 11 39 - -
Csa01g01277 421 MobiDBLite consensus disorder prediction 398 421 - -
Csa01g01277 421 CDD STKc_IRAK 108 377 - -
Csa01g01277 421 Coils Coil 408 421 - -
Csa01g01277 421 Pfam Protein kinase domain 107 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01277 421 MobiDBLite consensus disorder prediction 382 421 - -
Csa01g01277 421 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Csa01g01277 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Csa01g01277 421 Gene3D Phosphorylase Kinase; domain 1 69 178 - -
Csa01g01277 421 Gene3D Transferase(Phosphotransferase) domain 1 179 405 - -
Csa01g01277 421 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 410 - -
Csa01g01277 421 SMART serkin_6 102 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01277 421 ProSiteProfiles Protein kinase domain profile. 102 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01277 421 MobiDBLite consensus disorder prediction 382 397 - -
Csa01g01277 421 PANTHER OS07G0668900 PROTEIN 1 410 - -
Csa01g01277 421 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01277 Csa-Chr1:8023792 Csa05g00641 Csa-Chr5:4259160 0 dispersed
Csa05g02307 Csa-Chr5:25567490 Csa01g01277 Csa-Chr1:8023792 4.31E-17 transposed
Csa01g01277 Csa-Chr1:8023792 Csa06g01695 Csa-Chr6:14910133 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77798 PF00069 Pkinase 3.70E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01277 - - csv:101215066 840.876