Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01277 | ATGGGTTGTTTTCGTTGTACCGGTTCATCCAGCAAGAAATCGGAGGATATCGAACAAAAAGACCCCAATACCTTCAATTCCAAAACCCATAAGCCCGATGATCGAACCCCTTCAGATAAAGCCAAAGTTATTTCAAATTTGGTGAAGAGGGATTCTGATGTGAAGGTGGTTGTGTCTAAAAATGACCAATTGGCTTTAGATGTAAAGAAATTGAATTTGAAAAATGAGGTTTCTGAAGAAGGAGAAGCCAATGGCCGTGCTAAGACGTTTACATTTGAAGAACTTGCAGCCGCTACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGGAAAAAGTTAATGAGGTTGTAGCAATTAAACAGCTAGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTGGAAGTTTTGACTTTAAGTCTAGCTGATCATCCCAACCTTGTAAAACTTATTGGCTTTTGTGCTGAAGGGGATCAGAGATTATTGGTTTACGAATATATGCCATTGGGATCATTGGAAAACCATTTACACGATCTTCGACCTGGTGCCAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGGTTGGAGTATTTGCATGAGAAGATGAAGCCCCCGGTTATATATCGTGATTTGAAATGCTCAAACATTTTACTCGGTGAAGGATATCATCCAAAGCTATCTGATTTTGGATTGGCTAAAGTAGGTCCTAGTGGGGATAAAACCCACGTTTCAACCAGGGTTATGGGCACATATGGGTATTGCGCTCCAGATTATGCAATGACAGGCCAGCTGACATTCAAATCAGATATTTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCGGAGCAAAATCTTGTGGCTTGGGCGCGACCCATGTTCCGAGACCGAAAAAAGTTCTCACAAATGGTTGATCCAATGCTCCAAGGACATTATCCTGTGAGAGGATTATACCAATCTCTAGCCATAGCCGCAATGTGTGTTCAGGAGCAACCAAATATGCGACCAGTCATAACTGATGTTGTAACAGCTTTAAACTACCTAGCATCCCAGAAATACGATCCCCAGACTCAACCAAACCAAAACTCCCAAAAGAGACCATCTTCTCATAAAATGGAACGGGGTGATGATAAGAAAGAAACTTCAGACAACGATGAGTCAGAGAGAGAGTGA | 1266 | 42.1 | MGCFRCTGSSSKKSEDIEQKDPNTFNSKTHKPDDRTPSDKAKVISNLVKRDSDVKVVVSKNDQLALDVKKLNLKNEVSEEGEANGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLEKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPMFRDRKKFSQMVDPMLQGHYPVRGLYQSLAIAAMCVQEQPNMRPVITDVVTALNYLASQKYDPQTQPNQNSQKRPSSHKMERGDDKKETSDNDESERE* | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8023792 | 8027266 | + | CsaV3_1G012770.1 | Csa01g01277 | 515774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01277 | 421 | SUPERFAMILY | Protein kinase-like (PK-like) | 88 | 395 | IPR011009 | - | |
Csa01g01277 | 421 | MobiDBLite | consensus disorder prediction | 11 | 39 | - | - | |
Csa01g01277 | 421 | MobiDBLite | consensus disorder prediction | 398 | 421 | - | - | |
Csa01g01277 | 421 | CDD | STKc_IRAK | 108 | 377 | - | - | |
Csa01g01277 | 421 | Coils | Coil | 408 | 421 | - | - | |
Csa01g01277 | 421 | Pfam | Protein kinase domain | 107 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g01277 | 421 | MobiDBLite | consensus disorder prediction | 382 | 421 | - | - | |
Csa01g01277 | 421 | ProSitePatterns | Protein kinases ATP-binding region signature. | 108 | 131 | IPR017441 | GO:0005524 | |
Csa01g01277 | 421 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g01277 | 421 | Gene3D | Phosphorylase Kinase; domain 1 | 69 | 178 | - | - | |
Csa01g01277 | 421 | Gene3D | Transferase(Phosphotransferase) domain 1 | 179 | 405 | - | - | |
Csa01g01277 | 421 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED | 1 | 410 | - | - | |
Csa01g01277 | 421 | SMART | serkin_6 | 102 | 379 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g01277 | 421 | ProSiteProfiles | Protein kinase domain profile. | 102 | 379 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g01277 | 421 | MobiDBLite | consensus disorder prediction | 382 | 397 | - | - | |
Csa01g01277 | 421 | PANTHER | OS07G0668900 PROTEIN | 1 | 410 | - | - | |
Csa01g01277 | 421 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01277 | Csa-Chr1:8023792 | Csa05g00641 | Csa-Chr5:4259160 | 0 | dispersed | |
Csa05g02307 | Csa-Chr5:25567490 | Csa01g01277 | Csa-Chr1:8023792 | 4.31E-17 | transposed | |
Csa01g01277 | Csa-Chr1:8023792 | Csa06g01695 | Csa-Chr6:14910133 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77798 | PF00069 | Pkinase | 3.70E-44 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01277 | - | - | csv:101215066 | 840.876 |