Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01294 ATGATGTCTGAATTTGTTTCCACAATGAGCAATTTGATTGGTGAAGAACAACATCAATATCATAATTCCAACCCAGTTCTTGTTCCTCTTAAGAAGAAGAGAAATTTGCCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCGTTTGCGAGATATGCAGCAAGGGATTTCAGAGAGACCAGAACTTGCAGCTTCATCGACGAGGGCACAACTTGCCGTGGAAGCTTCGACAAAGGACGAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGTGACCTCACTGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACATTATTTTCCAGAAAAGATAGCTTCATTACTCACAGAGCATTTTGTGATGCACTAGCTGAAGAAAACTCAAGAATAAATCATCATCCAACCTTCATCAACAACAACTTTTCCCCTACTTCTTCTTCACTACTTCTCCAACAACCAAACTTCCCACCCTCCTCGGCCACTGCCACTGCTACTGCCACTACCACTACCGTCATCGACCAAAGCCCCCTCGCCCACCATTTCCCTAACATTATATTCGACCATGACGATGACCACAAGCCTCGTCCTCTTTCAATATCATCCCCGCCGCAGCTCCCGCTCTGGCTTGACCCTCCACCAAATCCTAACTCCTTTTTCTCTGCTGCCCCCGCCATCCACACCTTCTCTGAAAACCCTACATTCTTCCCAGAAAATCAATACCCTTTTTTGTCGGAGGCGTTAACGACGGCCTCTTCGTACACCGTCGCACCCCACATGTCTGCCACCGCACTTCTCCAAAAGGCCGCTCAAATGGGGCCGACCGTAACCCCCACCATATCGCCAATTCTCTTCAATGCCCCCACTGCGACCACCGGCAGGGGATATGGAATGATCAACTCCACCGCTGCCGTTGTGGGATTATCAGATGGCCGTTCGACGATGAAGCCATTGATGGGCGGAGCAAAGGAAGAAATTGGAGGGCATAATTTGACCAGAGATTTTCTCGGCGTCGGAAATCAGGTGGTGCATCTCACCCCGGTGGGTTCCAATCAATACGGTGATCAGAGCCGCCGCAATTAG 1272 49.06 MMSEFVSTMSNLIGEEQHQYHNSNPVLVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHPTFINNNFSPTSSSLLLQQPNFPPSSATATATATTTTVIDQSPLAHHFPNIIFDHDDDHKPRPLSISSPPQLPLWLDPPPNPNSFFSAAPAIHTFSENPTFFPENQYPFLSEALTTASSYTVAPHMSATALLQKAAQMGPTVTPTISPILFNAPTATTGRGYGMINSTAAVVGLSDGRSTMKPLMGGAKEEIGGHNLTRDFLGVGNQVVHLTPVGSNQYGDQSRRN* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8215758 8219032 - CsaV3_1G012940.1 Csa01g01294 515791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01294 423 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Csa01g01294 423 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Csa01g01294 423 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 17 405 - -
Csa01g01294 423 Gene3D Classic Zinc Finger 114 194 - -
Csa01g01294 423 SMART c2h2final6 60 82 IPR013087 -
Csa01g01294 423 SMART c2h2final6 136 156 IPR013087 -
Csa01g01294 423 SMART c2h2final6 101 131 IPR013087 -
Csa01g01294 423 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Csa01g01294 423 Gene3D Classic Zinc Finger 39 112 - -
Csa01g01294 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Csa01g01294 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01294 Csa-Chr1:8215758 Csa03g04077 Csa-Chr3:35706524 1.16E-112 dispersed
Csa07g02385 Csa-Chr7:21971899 Csa01g01294 Csa-Chr1:8215758 1.55E-107 dispersed
Csa01g01294 Csa-Chr1:8215758 Csa02g02630 Csa-Chr2:22847054 9.43E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30711 PF00096 zf-C2H2 0.0071 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01294 K25870 K25869 csv:101212420 824.698