Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01294 | ATGATGTCTGAATTTGTTTCCACAATGAGCAATTTGATTGGTGAAGAACAACATCAATATCATAATTCCAACCCAGTTCTTGTTCCTCTTAAGAAGAAGAGAAATTTGCCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCGTTTGCGAGATATGCAGCAAGGGATTTCAGAGAGACCAGAACTTGCAGCTTCATCGACGAGGGCACAACTTGCCGTGGAAGCTTCGACAAAGGACGAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGTGACCTCACTGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACATTATTTTCCAGAAAAGATAGCTTCATTACTCACAGAGCATTTTGTGATGCACTAGCTGAAGAAAACTCAAGAATAAATCATCATCCAACCTTCATCAACAACAACTTTTCCCCTACTTCTTCTTCACTACTTCTCCAACAACCAAACTTCCCACCCTCCTCGGCCACTGCCACTGCTACTGCCACTACCACTACCGTCATCGACCAAAGCCCCCTCGCCCACCATTTCCCTAACATTATATTCGACCATGACGATGACCACAAGCCTCGTCCTCTTTCAATATCATCCCCGCCGCAGCTCCCGCTCTGGCTTGACCCTCCACCAAATCCTAACTCCTTTTTCTCTGCTGCCCCCGCCATCCACACCTTCTCTGAAAACCCTACATTCTTCCCAGAAAATCAATACCCTTTTTTGTCGGAGGCGTTAACGACGGCCTCTTCGTACACCGTCGCACCCCACATGTCTGCCACCGCACTTCTCCAAAAGGCCGCTCAAATGGGGCCGACCGTAACCCCCACCATATCGCCAATTCTCTTCAATGCCCCCACTGCGACCACCGGCAGGGGATATGGAATGATCAACTCCACCGCTGCCGTTGTGGGATTATCAGATGGCCGTTCGACGATGAAGCCATTGATGGGCGGAGCAAAGGAAGAAATTGGAGGGCATAATTTGACCAGAGATTTTCTCGGCGTCGGAAATCAGGTGGTGCATCTCACCCCGGTGGGTTCCAATCAATACGGTGATCAGAGCCGCCGCAATTAG | 1272 | 49.06 | MMSEFVSTMSNLIGEEQHQYHNSNPVLVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHPTFINNNFSPTSSSLLLQQPNFPPSSATATATATTTTVIDQSPLAHHFPNIIFDHDDDHKPRPLSISSPPQLPLWLDPPPNPNSFFSAAPAIHTFSENPTFFPENQYPFLSEALTTASSYTVAPHMSATALLQKAAQMGPTVTPTISPILFNAPTATTGRGYGMINSTAAVVGLSDGRSTMKPLMGGAKEEIGGHNLTRDFLGVGNQVVHLTPVGSNQYGDQSRRN* | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8215758 | 8219032 | - | CsaV3_1G012940.1 | Csa01g01294 | 515791 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01294 | 423 | Pfam | Zinc finger, C2H2 type | 60 | 82 | IPR013087 | - | |
Csa01g01294 | 423 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 62 | 82 | IPR013087 | - | |
Csa01g01294 | 423 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 13-RELATED | 17 | 405 | - | - | |
Csa01g01294 | 423 | Gene3D | Classic Zinc Finger | 114 | 194 | - | - | |
Csa01g01294 | 423 | SMART | c2h2final6 | 60 | 82 | IPR013087 | - | |
Csa01g01294 | 423 | SMART | c2h2final6 | 136 | 156 | IPR013087 | - | |
Csa01g01294 | 423 | SMART | c2h2final6 | 101 | 131 | IPR013087 | - | |
Csa01g01294 | 423 | SUPERFAMILY | beta-beta-alpha zinc fingers | 59 | 156 | IPR036236 | - | |
Csa01g01294 | 423 | Gene3D | Classic Zinc Finger | 39 | 112 | - | - | |
Csa01g01294 | 423 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 60 | 82 | IPR013087 | - | |
Csa01g01294 | 423 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 17 | 405 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01294 | Csa-Chr1:8215758 | Csa03g04077 | Csa-Chr3:35706524 | 1.16E-112 | dispersed | |
Csa07g02385 | Csa-Chr7:21971899 | Csa01g01294 | Csa-Chr1:8215758 | 1.55E-107 | dispersed | |
Csa01g01294 | Csa-Chr1:8215758 | Csa02g02630 | Csa-Chr2:22847054 | 9.43E-115 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30711 | PF00096 | zf-C2H2 | 0.0071 | CL0361 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01294 | K25870 | K25869 | csv:101212420 | 824.698 |