Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01295 ATGGCGGGGGCAGCCGGTGGCAAGTCGCTGGAGCAAACACCGACATGGGCCGTTGCCGTTGTTTGCTTTGTTTTGCTCGTCATCTCTATTTTCATCGAATATAGTCTCCATCTTATCGGACATTGGCTAAAGAAGAGACACAAACGGGCGTTGTTTGAAGCATTAGAGAAGATCAAATCAGAGCTTATGTTATTGGGGTTTATATCATTGCTACTAACGGTGGGGCAAGGACCAATAACGGAGATATGTATTCCACAACATGTAGCTGCAACGTGGCATCCATGTACAAAGGAAAGAGAAGATGAGATGAACAAAGAGGTGGAGAAATCTGTGGAACATTTGGGTCTTAATCGCCGGAGACTCCTTCATCTCCTCGGAAATGGTGAAAGTTTCCGGCGGAGTTTGGCCGCTGCGGGAGGAGAGGATAAATGTGCCGCCAAGGGTAAAGCTTCCTTTATTTCAGCAGATGGAATTCATCAACTTCATATCTTCATTTTTGTGTTGGCTGTTTTTCATGTTTTGTATTGTGTTCTAACTTATGCGTTGGCTAGAGCTAAGATGAGGAGTTGGAAAACATGGGAAAAAGAGACCAAAACTGCTGAATACCAATTCTCACATGATCCAGAGAGGTTTAGGTTTGCAAGAGACACCTCATTTGGGAGAAGACATTTGAGCTTTTGGACCAAAAATCCTGCCTTGATGTGGATCGTTTGTTTCTTCAGACAATTTGTAAGATCTGTTCCAAAAGTTGATTACTTGACATTAAGACATGGGTTTATAATGGCACATTTAGCACCTCAAAGTCATACACAATTTGATTTTCAAAAATACATTAATAGATCCCTTGAAGAAGACTTCAAAGTTGTTGTGGGAATCAGCCCACCAATTTGGTTCTTTGCTGTTCTATTTCTCCTCTCAAACACTCACGGTTGGAGGGCGTATCTATGGCTGCCATTCATCCCACTAATCATTTTGCTGTTGATTGGAACAAAATTGCAAGTGATCATAACGAAAATGGCACTAAGAATACAAGAAAGAGGTGAAGTAGTGAAGGGCGTGCCGGTGGTGGAGCCTGGCGATGACCTCTTTTGGTTTAATCGACCTCGCCTTATTCTTTATCTCATCAACTTTGTTCTCTTTCAAAATGCCTTCCAAGTTGCCTTCTTTGCTTGGACTTGGTATGAGTTTGGGTTGAATTCTTGCTTCCATGAGCATATAGAAGATGTGGTGATCAGAATTTCTATGGGGGTGCTTGTACAAATCCTTTGCAGTTATGTTACTCTTCCTCTTTATGCACTAGTCACTCAGATGGGTTCAACAATGAAGCCAACTATATTCAATGAGAGAGTGGCAGAGGCCCTTCGCAATTGGTACCACTCGGCTCGAAAGCACATCAAACACAACCGCGGTTCGGTCACTCCAATGTCGAGCCGACCCGCCACCCCGACTCACAGCATGTCACCTGTCCACCTTCTCCGACACTACAAGAGTGAAGTCGATAGCTTCCACACCTCACCGAGAAGGTCACCGTTCGACACCGATCGTTGGGACAACGATTCGCCCTCTCCATCTCGCCATGTTGATGGTTCGTCTTCGTCACAACCCCACGTTGAGATGGGAGGTTATGAAAAAGATCCCGTTGAATCAAGTTCGTCTCAAGTTGATCCGGTTCAACCATCTCGAAACCGCAATCAACATGAGATTCATATTGGAGGCCCCAAAGACTTTTCATTTGATAGAGTTGAATGA 1749 44.2 MAGAAGGKSLEQTPTWAVAVVCFVLLVISIFIEYSLHLIGHWLKKRHKRALFEALEKIKSELMLLGFISLLLTVGQGPITEICIPQHVAATWHPCTKEREDEMNKEVEKSVEHLGLNRRRLLHLLGNGESFRRSLAAAGGEDKCAAKGKASFISADGIHQLHIFIFVLAVFHVLYCVLTYALARAKMRSWKTWEKETKTAEYQFSHDPERFRFARDTSFGRRHLSFWTKNPALMWIVCFFRQFVRSVPKVDYLTLRHGFIMAHLAPQSHTQFDFQKYINRSLEEDFKVVVGISPPIWFFAVLFLLSNTHGWRAYLWLPFIPLIILLLIGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQVAFFAWTWYEFGLNSCFHEHIEDVVIRISMGVLVQILCSYVTLPLYALVTQMGSTMKPTIFNERVAEALRNWYHSARKHIKHNRGSVTPMSSRPATPTHSMSPVHLLRHYKSEVDSFHTSPRRSPFDTDRWDNDSPSPSRHVDGSSSSQPHVEMGGYEKDPVESSSSQVDPVQPSRNRNQHEIHIGGPKDFSFDRVE* 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8230778 8237019 - CsaV3_1G012950.1 Csa01g01295 515792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01295 582 MobiDBLite consensus disorder prediction 500 522 - -
Csa01g01295 582 MobiDBLite consensus disorder prediction 467 486 - -
Csa01g01295 582 MobiDBLite consensus disorder prediction 567 582 - -
Csa01g01295 582 Pfam Mlo family 8 495 IPR004326 GO:0006952|GO:0016021
Csa01g01295 582 MobiDBLite consensus disorder prediction 523 537 - -
Csa01g01295 582 MobiDBLite consensus disorder prediction 470 484 - -
Csa01g01295 582 PANTHER MLO-LIKE PROTEIN 1 579 - -
Csa01g01295 582 PANTHER MLO-LIKE PROTEIN 1 1 579 IPR004326 GO:0006952|GO:0016021
Csa01g01295 582 MobiDBLite consensus disorder prediction 546 565 - -
Csa01g01295 582 MobiDBLite consensus disorder prediction 500 582 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01295 K08472 MLO; mlo protein - csv:101217225 1155.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01295 Csa-Chr1:8230778 Csa05g02821 Csa-Chr5:28700815 0 dispersed
Csa01g01295 Csa-Chr1:8230778 Csa01g01298 Csa-Chr1:8280574 1.14E-171 proximal
Csa01g01295 Csa-Chr1:8230778 Csa06g01679 Csa-Chr6:14713131 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g290 . Blo03g01272 Bda02g00768 . Bpe01g00178 Bpe08g01330 . . Cmo13g00190 . Cma01g00538 . . Car13g00156 . Cpe05g00830 . Bhi08g00292 . . . Hepe10g1101 . Lcy11g0297 Cla02g02050 Cam02g2174 Cec02g2213 Cco02g2253 Clacu02g2159 Cmu02g2096 Cre02g2410 . . . . . . Chy11g01330 . . Blo14g00166 Bda07g00625 Bda09g00185 . . Bma07g00138 . Sed01g0995 Cmo02g00883 Cmo20g00511 Cma02g00883 Cma20g00477 . Car20g00418 . . Bhi10g00563 Tan05g0268 Cmetu12g1399 . Hepe08g0876 . . . . . . . . . . Csa01g01295 Chy12g00872 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02923 . 3 531 MLO family AT5G53760 71.6 4.7e-218 754.2
Csa04g02353 . 5 552 MLO family AT5G53760 69.2 1.3e-215 746.1
Csa01g01298 CCT,ECH 10 467 MLO family AT3G45290 55.2 9.5e-138 487.3
Csa05g02923 . 3 531 MLO family AT1G26700 70.1 2.1e-210 728.8
Csa04g02353 . 1 532 MLO family AT1G26700 67.9 9.5e-208 719.9
Csa01g01295 . 8 510 MLO family AT2G39200 65.8 1.3e-191 666.4
Csa05g02821 . 7 533 MLO family AT2G39200 64.1 1.7e-191 666.0
Csa06g01679 CCT,ECH 8 504 MLO family AT2G39200 66.7 1.0e-188 656.8
Csa06g01679 CCT,ECH 8 415 MLO family AT1G61560 66.9 1.9e-160 562.4
Csa01g01295 . 1 416 MLO family AT1G61560 67.2 4.0e-158 554.7
Csa05g02821 . 7 408 MLO family AT1G61560 65.7 2.9e-153 538.5
Csa06g03404 . 28 420 MLO family AT1G61560 52.5 2.0e-117 419.5
Csa03g00015 . 27 418 MLO family AT1G61560 51.2 3.3e-112 402.1
Csa06g03404 . 11 488 MLO family AT2G17430 62.7 1.7e-172 602.8
Csa03g00015 . 6 484 MLO family AT2G17430 61.0 2.5e-160 562.4
Csa06g01952 . 2 479 MLO family AT2G17430 58.0 6.1e-151 531.2
Csa06g03404 . 28 558 MLO family AT2G17480 63.6 3.4e-195 678.3
Csa03g00015 . 5 566 MLO family AT2G17480 57.9 2.3e-175 612.5
Csa06g01952 . 12 464 MLO family AT2G17480 59.7 4.8e-149 525.0
Csa06g01679 CCT,ECH 8 462 MLO family AT2G17480 51.2 1.3e-125 447.2
Csa06g01952 . 9 380 MLO family AT1G42560 60.1 1.0e-123 440.3
Csa06g03404 . 28 384 MLO family AT1G42560 58.4 5.1e-120 427.9
Csa03g00015 . 27 383 MLO family AT1G42560 55.5 2.7e-113 405.6
Csa01g01295 . 6 381 MLO family AT1G42560 50.1 4.4e-95 345.1
Csa06g00633 . 6 419 MLO family AT4G24250 53.5 1.8e-115 412.9
Csa02g01639 . 17 434 MLO family AT4G24250 51.1 1.9e-109 392.9
Csa06g03404 . 9 385 MLO family AT5G65970 65.8 1.4e-143 506.5
Csa03g00015 . 6 383 MLO family AT5G65970 65.2 6.0e-142 501.1
Csa06g01952 . 5 380 MLO family AT5G65970 57.3 1.8e-117 419.9
Csa06g01679 CCT,ECH 2 380 MLO family AT5G65970 51.2 7.0e-106 381.3
Csa01g01295 . 2 381 MLO family AT5G65970 50.8 1.6e-102 370.2
Csa06g01952 . 2 472 MLO family AT2G33670 63.8 1.2e-169 593.2
Csa06g03404 . 28 490 MLO family AT2G33670 60.0 3.4e-156 548.5
Csa03g00015 . 18 466 MLO family AT2G33670 57.6 1.2e-140 496.9
Csa05g02821 . 64 540 MLO family AT1G11310 62.7 3.1e-168 588.6
Csa01g01295 . 63 506 MLO family AT1G11310 65.3 3.5e-164 575.1
Csa06g01679 CCT,ECH 63 519 MLO family AT1G11310 63.2 1.9e-162 569.3
Csa06g00633 . 5 509 MLO family AT2G44110 58.4 3.3e-167 585.1
Csa06g00633 . 1 485 MLO family AT4G02600 75.3 8.7e-211 729.9
Csa03g01923 . 3 557 MLO family AT1G11000 66.0 5.6e-211 730.7
Csa03g00073 . 1 480 MLO family AT1G11000 52.1 4.4e-131 465.3
Csa06g00633 . 1 485 MLO family AT4G02600 75.3 8.7e-211 729.9
Csa05g02821 . 64 540 MLO family AT1G11310 62.7 3.1e-168 588.6
Csa01g01295 . 63 506 MLO family AT1G11310 65.3 3.5e-164 575.1
Csa06g01679 CCT,ECH 63 519 MLO family AT1G11310 63.2 1.9e-162 569.3
Csa01g01298 CCT,ECH 10 467 MLO family AT3G45290 55.2 9.5e-138 487.3
Csa03g01923 . 3 557 MLO family AT1G11000 66.0 5.6e-211 730.7
Csa03g00073 . 1 480 MLO family AT1G11000 52.1 4.4e-131 465.3
Csa06g01952 . 2 472 MLO family AT2G33670 63.8 1.2e-169 593.2
Csa06g03404 . 28 490 MLO family AT2G33670 60.0 3.4e-156 548.5
Csa03g00015 . 18 466 MLO family AT2G33670 57.6 1.2e-140 496.9
Csa06g01679 CCT,ECH 8 415 MLO family AT1G61560 66.9 1.9e-160 562.4
Csa01g01295 . 1 416 MLO family AT1G61560 67.2 4.0e-158 554.7
Csa05g02821 . 7 408 MLO family AT1G61560 65.7 2.9e-153 538.5
Csa06g03404 . 28 420 MLO family AT1G61560 52.5 2.0e-117 419.5
Csa03g00015 . 27 418 MLO family AT1G61560 51.2 3.3e-112 402.1
Csa06g03404 . 11 488 MLO family AT2G17430 62.7 1.7e-172 602.8
Csa03g00015 . 6 484 MLO family AT2G17430 61.0 2.5e-160 562.4
Csa06g01952 . 2 479 MLO family AT2G17430 58.0 6.1e-151 531.2
Csa06g03404 . 28 558 MLO family AT2G17480 63.6 3.4e-195 678.3
Csa03g00015 . 5 566 MLO family AT2G17480 57.9 2.3e-175 612.5
Csa06g01952 . 12 464 MLO family AT2G17480 59.7 4.8e-149 525.0
Csa06g01679 CCT,ECH 8 462 MLO family AT2G17480 51.2 1.3e-125 447.2
Csa06g01952 . 9 380 MLO family AT1G42560 60.1 1.0e-123 440.3
Csa06g03404 . 28 384 MLO family AT1G42560 58.4 5.1e-120 427.9
Csa03g00015 . 27 383 MLO family AT1G42560 55.5 2.7e-113 405.6
Csa01g01295 . 6 381 MLO family AT1G42560 50.1 4.4e-95 345.1
Csa06g03404 . 9 385 MLO family AT5G65970 65.8 1.4e-143 506.5
Csa03g00015 . 6 383 MLO family AT5G65970 65.2 6.0e-142 501.1
Csa06g01952 . 5 380 MLO family AT5G65970 57.3 1.8e-117 419.9
Csa06g01679 CCT,ECH 2 380 MLO family AT5G65970 51.2 7.0e-106 381.3
Csa01g01295 . 2 381 MLO family AT5G65970 50.8 1.6e-102 370.2
Csa05g02923 . 3 531 MLO family AT5G53760 71.6 4.7e-218 754.2
Csa04g02353 . 5 552 MLO family AT5G53760 69.2 1.3e-215 746.1
Csa01g01295 . 8 510 MLO family AT2G39200 65.8 1.3e-191 666.4
Csa05g02821 . 7 533 MLO family AT2G39200 64.1 1.7e-191 666.0
Csa06g01679 CCT,ECH 8 504 MLO family AT2G39200 66.7 1.0e-188 656.8
Csa06g00633 . 6 419 MLO family AT4G24250 53.5 1.8e-115 412.9
Csa02g01639 . 17 434 MLO family AT4G24250 51.1 1.9e-109 392.9
Csa05g02923 . 3 531 MLO family AT1G26700 70.1 2.1e-210 728.8
Csa04g02353 . 1 532 MLO family AT1G26700 67.9 9.5e-208 719.9
Csa06g00633 . 5 509 MLO family AT2G44110 58.4 3.3e-167 585.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001805 3 2 2 3 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 2 2 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g01295 Csa_Chr01 FPKM 22.67293 24.84313 2.07101 1.980133 7.459177 7.713154 7.615695 0.943003 0.569996 0.822899