Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01295 ATGGCGGGGGCAGCCGGTGGCAAGTCGCTGGAGCAAACACCGACATGGGCCGTTGCCGTTGTTTGCTTTGTTTTGCTCGTCATCTCTATTTTCATCGAATATAGTCTCCATCTTATCGGACATTGGCTAAAGAAGAGACACAAACGGGCGTTGTTTGAAGCATTAGAGAAGATCAAATCAGAGCTTATGTTATTGGGGTTTATATCATTGCTACTAACGGTGGGGCAAGGACCAATAACGGAGATATGTATTCCACAACATGTAGCTGCAACGTGGCATCCATGTACAAAGGAAAGAGAAGATGAGATGAACAAAGAGGTGGAGAAATCTGTGGAACATTTGGGTCTTAATCGCCGGAGACTCCTTCATCTCCTCGGAAATGGTGAAAGTTTCCGGCGGAGTTTGGCCGCTGCGGGAGGAGAGGATAAATGTGCCGCCAAGGGTAAAGCTTCCTTTATTTCAGCAGATGGAATTCATCAACTTCATATCTTCATTTTTGTGTTGGCTGTTTTTCATGTTTTGTATTGTGTTCTAACTTATGCGTTGGCTAGAGCTAAGATGAGGAGTTGGAAAACATGGGAAAAAGAGACCAAAACTGCTGAATACCAATTCTCACATGATCCAGAGAGGTTTAGGTTTGCAAGAGACACCTCATTTGGGAGAAGACATTTGAGCTTTTGGACCAAAAATCCTGCCTTGATGTGGATCGTTTGTTTCTTCAGACAATTTGTAAGATCTGTTCCAAAAGTTGATTACTTGACATTAAGACATGGGTTTATAATGGCACATTTAGCACCTCAAAGTCATACACAATTTGATTTTCAAAAATACATTAATAGATCCCTTGAAGAAGACTTCAAAGTTGTTGTGGGAATCAGCCCACCAATTTGGTTCTTTGCTGTTCTATTTCTCCTCTCAAACACTCACGGTTGGAGGGCGTATCTATGGCTGCCATTCATCCCACTAATCATTTTGCTGTTGATTGGAACAAAATTGCAAGTGATCATAACGAAAATGGCACTAAGAATACAAGAAAGAGGTGAAGTAGTGAAGGGCGTGCCGGTGGTGGAGCCTGGCGATGACCTCTTTTGGTTTAATCGACCTCGCCTTATTCTTTATCTCATCAACTTTGTTCTCTTTCAAAATGCCTTCCAAGTTGCCTTCTTTGCTTGGACTTGGTATGAGTTTGGGTTGAATTCTTGCTTCCATGAGCATATAGAAGATGTGGTGATCAGAATTTCTATGGGGGTGCTTGTACAAATCCTTTGCAGTTATGTTACTCTTCCTCTTTATGCACTAGTCACTCAGATGGGTTCAACAATGAAGCCAACTATATTCAATGAGAGAGTGGCAGAGGCCCTTCGCAATTGGTACCACTCGGCTCGAAAGCACATCAAACACAACCGCGGTTCGGTCACTCCAATGTCGAGCCGACCCGCCACCCCGACTCACAGCATGTCACCTGTCCACCTTCTCCGACACTACAAGAGTGAAGTCGATAGCTTCCACACCTCACCGAGAAGGTCACCGTTCGACACCGATCGTTGGGACAACGATTCGCCCTCTCCATCTCGCCATGTTGATGGTTCGTCTTCGTCACAACCCCACGTTGAGATGGGAGGTTATGAAAAAGATCCCGTTGAATCAAGTTCGTCTCAAGTTGATCCGGTTCAACCATCTCGAAACCGCAATCAACATGAGATTCATATTGGAGGCCCCAAAGACTTTTCATTTGATAGAGTTGAATGA 1749 44.2 MAGAAGGKSLEQTPTWAVAVVCFVLLVISIFIEYSLHLIGHWLKKRHKRALFEALEKIKSELMLLGFISLLLTVGQGPITEICIPQHVAATWHPCTKEREDEMNKEVEKSVEHLGLNRRRLLHLLGNGESFRRSLAAAGGEDKCAAKGKASFISADGIHQLHIFIFVLAVFHVLYCVLTYALARAKMRSWKTWEKETKTAEYQFSHDPERFRFARDTSFGRRHLSFWTKNPALMWIVCFFRQFVRSVPKVDYLTLRHGFIMAHLAPQSHTQFDFQKYINRSLEEDFKVVVGISPPIWFFAVLFLLSNTHGWRAYLWLPFIPLIILLLIGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQVAFFAWTWYEFGLNSCFHEHIEDVVIRISMGVLVQILCSYVTLPLYALVTQMGSTMKPTIFNERVAEALRNWYHSARKHIKHNRGSVTPMSSRPATPTHSMSPVHLLRHYKSEVDSFHTSPRRSPFDTDRWDNDSPSPSRHVDGSSSSQPHVEMGGYEKDPVESSSSQVDPVQPSRNRNQHEIHIGGPKDFSFDRVE* 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8230778 8237019 - CsaV3_1G012950.1 Csa01g01295 515792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01295 582 MobiDBLite consensus disorder prediction 500 522 - -
Csa01g01295 582 MobiDBLite consensus disorder prediction 467 486 - -
Csa01g01295 582 MobiDBLite consensus disorder prediction 567 582 - -
Csa01g01295 582 Pfam Mlo family 8 495 IPR004326 GO:0006952|GO:0016021
Csa01g01295 582 MobiDBLite consensus disorder prediction 523 537 - -
Csa01g01295 582 MobiDBLite consensus disorder prediction 470 484 - -
Csa01g01295 582 PANTHER MLO-LIKE PROTEIN 1 579 - -
Csa01g01295 582 PANTHER MLO-LIKE PROTEIN 1 1 579 IPR004326 GO:0006952|GO:0016021
Csa01g01295 582 MobiDBLite consensus disorder prediction 546 565 - -
Csa01g01295 582 MobiDBLite consensus disorder prediction 500 582 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01295 Csa-Chr1:8230778 Csa05g02821 Csa-Chr5:28700815 0 dispersed
Csa01g01295 Csa-Chr1:8230778 Csa01g01298 Csa-Chr1:8280574 1.14E-171 proximal
Csa01g01295 Csa-Chr1:8230778 Csa06g01679 Csa-Chr6:14713131 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01295 K08472 - csv:101217225 1155.97