Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01296 ATGTCACTTTCTCCTCACTTGTTTCTCCTTCTTTTTACCTTAGCATCCCTCACCGCTGCCGCAATCGCCGCCGTTCAATGCCCTCTCAACTTCACCCTTCTCCGCCAGTTCTCCCAGGGTTCCGCCATTTCCCGCTCCGACGAATGCCAATACATCCGCCTTGGTCTCCGCCTCGTCCTTTCCCAGTACCTTAAACTCACCGGCTCCTTCTTGCCCCCGGTGAACTCTTCCGATTCATGCTGGAATTCTTACCAATCGATTGTGAATGTTTCTTGGCCGAATTTCGACATTCGGAGCTCTTGTGGGTTTCAAACCGGGTGGATTTCTCAAGGCTGTATGAACATAACTACCAAATCAAGGTTTGAGAGAATTGTTCCCAAATCAGCCCTTGATGGTGTTGTTGCGAACTGTAATCAATCGCTTGAAAGTGGTTCCCCCTGTGCCTTGTGCACGACGAGTCTCGCGATCATTCAGGCCACGTTCTTGACCGGTCCGTCCATTGGGAATGTCACTGATTGCCCCGCATATCCATCGATCTACACGGCGGCGTTCGTGAATCATTTCGGACCTACCGATTGGGGAACTGCCAAATGTTTATTCTCACTGAATCTTCCTTCTTCGGGGAATTCGAGAAGTAAGAAGCGGAATACGGTGGTGTTAGTTGTTCTAATTTGTTGTGGCGTTGCGGCGGCGGCGGCGGCGGTTGCAGGTGGGTTGTTTTTCTGGCGGAAACAGGGGAAAGTCAAGAAGAACGATAGAATTGGTAGAGTTGAAACAGGGTTTGGTTCTGGATTGGAATCGATTAGTGCAAGCACTACTTTGGTGAAGTTCACATTCGATGAAATCAAGAGGGCAACCAGGAATTTTAGTAGAGATAACATAATTGGAAGAGGGGGTTATGGGAATGTGTATAAAGGGGTTCTATTAGATGATTCTGAAGTTGCATTGAAGAGGTTTAAGAACTGTTCTGCAGCAGGGGATGCCATTTTTGCTCATGAAGTTGAGGTAATTTCAAGTGTTAGGCATGTTAATCTTGTAGCTGTAAGGGGATATTGTATTGCAACCACTCCAATGGAAGGTCACCAGAGGATAATTGTGTGTGATTTGATGAAGAATGGGAGTCTTTATGACCATTTGTTTGGGTTTTCAGATCAGAGATTGAGTTGGCCAATTAGGCAAAAGATTGCTCTTGGCACAGCTAGAGGATTGGCTTATCTGCATTACGGAGCTCAGCCTTCCATTATCCATAGAGATATCAAAGCCAACAACATTCTTTTGGATGAAAATTTTGAACCTAAGGTAGCTGACTTTGGTTTAGCTAAGTTTACTCCAGAAGGAATGACTCATTTAAGCACAAGAGTTGCTGGAACTATGGGGTATGTGGCGCCCGAGTATGCCTTATATGGCCAGTTGACTGAGAGGAGTGATGTGTATAGCTTTGGAGTTGTTCTACTCGAGCTATTGAGCGGGAGGAAGGCACTTGGGGTGAGGAGCCATGACAGCCAACCATTTCTAGTGACTGATTGGGCTTGGTCTTTGGTTAGGGAACAAAAAGCAATGGATGTTATTGAAGAAGGCATGCCAGAGCTGGGTTCTCCAGAGGTTGTTGAAAAGTATGTCTTGATTGCTGTTCTTTGTTCACATCCCCAACTCTATGCCAGACCATCAATGGATCAAGTAGTGAAAATGCTTGAAACTGAGCTATCTGTTCCTTCAATCCCAGAGAGACCCATCCCTTTAGTTGCTGATATTGATGAAATTGAGAAATCTATGAGTAGTAGTGGTTCGGCTCAGCATTCTGGTTCAGTTGGCTTTCATAGTTTCGCATTACAGAATGACCATAAATAG 1848 45.62 MSLSPHLFLLLFTLASLTAAAIAAVQCPLNFTLLRQFSQGSAISRSDECQYIRLGLRLVLSQYLKLTGSFLPPVNSSDSCWNSYQSIVNVSWPNFDIRSSCGFQTGWISQGCMNITTKSRFERIVPKSALDGVVANCNQSLESGSPCALCTTSLAIIQATFLTGPSIGNVTDCPAYPSIYTAAFVNHFGPTDWGTAKCLFSLNLPSSGNSRSKKRNTVVLVVLICCGVAAAAAAVAGGLFFWRKQGKVKKNDRIGRVETGFGSGLESISASTTLVKFTFDEIKRATRNFSRDNIIGRGGYGNVYKGVLLDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVAVRGYCIATTPMEGHQRIIVCDLMKNGSLYDHLFGFSDQRLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKANNILLDENFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSHDSQPFLVTDWAWSLVREQKAMDVIEEGMPELGSPEVVEKYVLIAVLCSHPQLYARPSMDQVVKMLETELSVPSIPERPIPLVADIDEIEKSMSSSGSAQHSGSVGFHSFALQNDHK* 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8249052 8252373 + CsaV3_1G012960.1 Csa01g01296 515793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01296 615 PANTHER OS01G0750732 PROTEIN 14 614 - -
Csa01g01296 615 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Csa01g01296 615 SMART serkin_6 289 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01296 615 Pfam SPARK 24 159 IPR043891 -
Csa01g01296 615 ProSiteProfiles Protein kinase domain profile. 289 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01296 615 SUPERFAMILY Protein kinase-like (PK-like) 266 565 IPR011009 -
Csa01g01296 615 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Csa01g01296 615 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 14 614 - -
Csa01g01296 615 Pfam Protein tyrosine and serine/threonine kinase 292 564 IPR001245 GO:0004672|GO:0006468
Csa01g01296 615 CDD STKc_IRAK 295 565 - -
Csa01g01296 615 Gene3D Transferase(Phosphotransferase) domain 1 370 579 - -
Csa01g01296 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01296 Csa-Chr1:8249052 Csa03g01914 Csa-Chr3:14845713 1.10E-115 dispersed
Csa01g01296 Csa-Chr1:8249052 Csa07g01177 Csa-Chr7:11510722 1.82E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77799 PF07714 PK_Tyr_Ser-Thr 4.90E-40 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01296 - - csv:101222675 1191.02