Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01304 | ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTGCAAGAATAAGAGATCCAATCTATGGATGCGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGGAAGGAATTGGGTCAAGTGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA | 552 | 44.38 | MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT* | 184 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8384569 | 8385621 | - | CsaV3_1G013040.1 | Csa01g01304 | 515801 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01304 | 183 | Pfam | Lateral organ boundaries (LOB) domain | 21 | 118 | IPR004883 | - | |
Csa01g01304 | 183 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 13 | 182 | - | - | |
Csa01g01304 | 183 | Coils | Coil | 100 | 127 | - | - | |
Csa01g01304 | 183 | ProSiteProfiles | LOB domain profile. | 20 | 121 | IPR004883 | - | |
Csa01g01304 | 183 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 13 | 182 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g01304 | Csa06g01169 | CCT | |
Csa01g01304 | Csa06g01169 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01304 | Csa-Chr1:8384569 | Csa06g01663 | Csa-Chr6:14608411 | 8.86E-67 | dispersed | |
Csa04g02312 | Csa-Chr4:23641694 | Csa01g01304 | Csa-Chr1:8384569 | 9.81E-07 | dispersed | |
Csa01g01304 | Csa-Chr1:8384569 | Csa01g01305 | Csa-Chr1:8399408 | 9.30E-80 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30712 | PF03195 | LOB | 1.70E-38 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01304 | - | - | csv:101222021 | 372.474 |