Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01304 ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTGCAAGAATAAGAGATCCAATCTATGGATGCGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGGAAGGAATTGGGTCAAGTGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA 552 44.38 MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8384569 8385621 - CsaV3_1G013040.1 Csa01g01304 515801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01304 183 Pfam Lateral organ boundaries (LOB) domain 21 118 IPR004883 -
Csa01g01304 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 13 182 - -
Csa01g01304 183 Coils Coil 100 127 - -
Csa01g01304 183 ProSiteProfiles LOB domain profile. 20 121 IPR004883 -
Csa01g01304 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 182 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01304 Csa06g01169 CCT
Csa01g01304 Csa06g01169 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01304 Csa-Chr1:8384569 Csa06g01663 Csa-Chr6:14608411 8.86E-67 dispersed
Csa04g02312 Csa-Chr4:23641694 Csa01g01304 Csa-Chr1:8384569 9.81E-07 dispersed
Csa01g01304 Csa-Chr1:8384569 Csa01g01305 Csa-Chr1:8399408 9.30E-80 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30712 PF03195 LOB 1.70E-38 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01304 - - csv:101222021 372.474