Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01305 ATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA 627 48.48 MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8399408 8400967 + CsaV3_1G013050.1 Csa01g01305 515802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01305 208 Coils Coil 119 146 - -
Csa01g01305 208 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g01305 208 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Csa01g01305 208 MobiDBLite consensus disorder prediction 1 32 - -
Csa01g01305 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 29 207 - -
Csa01g01305 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 207 - -
Csa01g01305 208 Pfam Lateral organ boundaries (LOB) domain 40 137 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01305 Csa-Chr1:8399408 Csa06g01663 Csa-Chr6:14608411 7.58E-80 dispersed
Csa02g01004 Csa-Chr2:9696483 Csa01g01305 Csa-Chr1:8399408 8.20E-26 dispersed
Csa03g00541 Csa-Chr3:4536999 Csa01g01305 Csa-Chr1:8399408 8.47E-12 dispersed
Csa05g01940 Csa-Chr5:22575066 Csa01g01305 Csa-Chr1:8399408 1.87E-19 dispersed
Csa01g01304 Csa-Chr1:8384569 Csa01g01305 Csa-Chr1:8399408 9.30E-80 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30713 PF03195 LOB 2.80E-40 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01305 - - csv:101222262 371.318