Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01316 ATGATTGTAGCAGCAGGGCAGAGGTCCAATGGCGGAATTGGGAGCGGAGAATTGTGCGATTTTGTCCGGCAAATGGTGGCCGGACGGTGGTTTTCGCTTTTCGCTTCGTTCCTTGTAATGGCCGGTGCGGGTGGAGTTTATTTGTTTGCTTATTACTCTAGAGACATCAAAACGACGCTCCAATGTGATCAAACGACATTGAACAAAATTGGGTTTTATAAAGACTTGGGATCCAATGTCGGCGTTTTCGCCGGACTTTTGGCCGAGGTGGTGCCAACTTGGCTTCTTCTTCTCATCGGCGCCGCCTTCAATTTTATGGGTTACTTTAAGATTTGGCAAGCGGTTACCGGCAAAATTGTCCGCCCCACCGTCGCCTTCTTTTGCTTTTACATTATGATTGGAGCTAATTCTCAAAATTTTGCTAACACAGGAGTGCTAGTGACGTGCGTGAAGAACTTTCCAGAGAGAAGAGGAGTAATGCTGGGGCTTCTAAAGGGCTTCGTGGGTCTAAGTGGAGCCATAATGACCCAATTTTACATCGCCATTTACGGCCATGATACAAAATCTCTTGTTCTTCTACTCGCTTGGTTCCCTTCTTTAATCTCATTGCTCTTCGTCTACACAATCCGAGAAATCAAATCCGTAAAACACCCAAATGAATTCAGAGTTTTCATTCAATTCCTTTGTGTCACCGTCCTCTTAACTATCTTACTCACCGTCATAATCTTCATTCAAAAACGTATCCATTTCGATCAATCCGCTCACATCGCCATTGTCGCTGCAATCCTTGCTCTCCTCTTTGTTCCATTGTTAATCGCCATTAGAGAAGAAGTCGTGCTCTGGAATCTCAACAAACGGACCCGAATTTCAAACCCTTTTACCAGAATCAAAATCGAAACCTCACAAACAAACTCCCCAGTTGATTCTCCCTCAACCTCACAACATCCGCATCCACATCCACCTCAAACCCAACCCACATCATGTTTCTCCAAAATTTTCAACAAGCCCGAACGAGGCGAGGATTACACTGTTCTTCAAGCCATTTTCAGTATCGATATGCTTATTATATGCTTCACTATGATGATCGGCGTCGGTGCGAGTTTAACCGCCATTGATAATCTAGGTCAAATCGGTGAAGCACAAGCCTACTCGTCTGAAACAATCAACTTACTCGTTTCATTAATGAGTATTTTCAATTTCGCTGGTAGAATCTTTTCTGGGTTTGTCTCCGAAATCTTGCTTGAGAAATTCCAATTCCCTCGTCCATTGATGCTCACATTGATCCTCCTGATTTCCTGTCTTGGACATCTTTTAGTAGCTTTCCCATTTGATGATTCACTTTACGTTGCATCAATCATAATAGGATTCTCAATGGGTTCACAAGTCCCATTACATTTCGCTATGATTTCAGAGATTTTTGGTCTTAAACATTACTCAACATTGTTTAATTTTGGGCAACTCTCTTGTCCAATTGGGTCTTATATTCTGAATGTTTTGGTGACTGGGAAGTTGTACGATGAAGTAGCACGTATTGGGAGTAATCCAAACATGCTACATTGTGTAGGGACCCATTGTTATGAACGATCGTTCTTGATTTTGGCTGGATTAACGTTTATGGTAGCGATGGTATCATTGATTTTGGTGAAAAGGACCAGGGAATTTTATAGAGGGGATATATACAAGAAATTCAGGGAAGATATGGAAACTTTGAAGACAGAAGTGGAGTTTTATAGAGTGGACGAGAAGAAAACTAGGATTGGAAATTTACTTGTTGATAAACATTCTATTCATTTCAAGAAATGA 1803 41.76 MIVAAGQRSNGGIGSGELCDFVRQMVAGRWFSLFASFLVMAGAGGVYLFAYYSRDIKTTLQCDQTTLNKIGFYKDLGSNVGVFAGLLAEVVPTWLLLLIGAAFNFMGYFKIWQAVTGKIVRPTVAFFCFYIMIGANSQNFANTGVLVTCVKNFPERRGVMLGLLKGFVGLSGAIMTQFYIAIYGHDTKSLVLLLAWFPSLISLLFVYTIREIKSVKHPNEFRVFIQFLCVTVLLTILLTVIIFIQKRIHFDQSAHIAIVAAILALLFVPLLIAIREEVVLWNLNKRTRISNPFTRIKIETSQTNSPVDSPSTSQHPHPHPPQTQPTSCFSKIFNKPERGEDYTVLQAIFSIDMLIICFTMMIGVGASLTAIDNLGQIGEAQAYSSETINLLVSLMSIFNFAGRIFSGFVSEILLEKFQFPRPLMLTLILLISCLGHLLVAFPFDDSLYVASIIIGFSMGSQVPLHFAMISEIFGLKHYSTLFNFGQLSCPIGSYILNVLVTGKLYDEVARIGSNPNMLHCVGTHCYERSFLILAGLTFMVAMVSLILVKRTREFYRGDIYKKFREDMETLKTEVEFYRVDEKKTRIGNLLVDKHSIHFKK* 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8495015 8496899 - CsaV3_1G013160.1 Csa01g01316 515813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01316 600 Pfam Nodulin-like 29 274 IPR010658 -
Csa01g01316 600 SUPERFAMILY MFS general substrate transporter 33 271 IPR036259 -
Csa01g01316 600 Coils Coil 560 580 - -
Csa01g01316 600 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 571 - -
Csa01g01316 600 MobiDBLite consensus disorder prediction 301 327 - -
Csa01g01316 600 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 14 571 - -
Csa01g01316 600 CDD MFS_Mch1p_like 28 541 - -
Csa01g01316 600 SUPERFAMILY MFS general substrate transporter 251 553 IPR036259 -
Csa01g01316 600 Gene3D MFS general substrate transporter like domains 351 580 IPR036259 -
Csa01g01316 600 Pfam Major Facilitator Superfamily 356 550 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01316 Csa-Chr1:8495015 Csa01g01332 Csa-Chr1:8623617 0 dispersed
Csa01g01333 Csa-Chr1:8627887 Csa01g01316 Csa-Chr1:8495015 0 dispersed
Csa01g01316 Csa-Chr1:8495015 Csa01g01317 Csa-Chr1:8505918 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01316 - - csv:101202941 1123.61