Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01323 ATGACTCTTATCCTTTTAGCTACTTTTTCCGGAAGTGGTTCTCCTCTTGCAGCCATTGATAACTTAGGCCAAGTCGCCGAATCACTTGCCTACCCGTCAGACGCTATAAGCATCATCATTTCTTGGGTTTCCGTATTCAATTTCTTCGGTCGAATCTTCTCTGGTTTCATCTCCGAAAACATCATGATGAAATGGAAATTACCTCGTCCTCTAACGTTTTTTGTCGCCTTCTTCATCATTGGCGTTGGCCAGCTTATTGTTGCGTATCCATCAACAGGTTCAGTGTTCATTGCTTCCATGGTAATCGGGTTTGGATTTGGAATGCATGCCATGCTATTCGCCATAATCTCAGACCTATTTGGGCTAAAACATTACTCAACATTGTTCAATTGTGGGCAACTGGTAGTCCCAATTGGGTCTTATATACTAAACGTGCATGTAGTAGGGAGAATATATGATAAAGAAGCATTAGTTAACGGTATAAAGTTGACGGGGAGAGGATTAATTTGCACCGGAGCTCATTGTTTTAATTTATCTTTCACAATTTTGGCTGGAGCAACATTGTGTGGTGGTATAATTATGCTTGTATTGGCTTATAGGACAAGAGAATTCTACCAAGGAGATGTATATAAGAAATATAGAGATGATATGTGGACTCCTCCAACTGAAATGGAGTTCTCTCACTTAGATAAGAAGAAAGTTCATGTTAGTATAAAAAGGCATCATATGTTCTCCATGCCTCCGTCGTCCGGTCCAACTAACCATACTGATCATTTTGTTCCTTATGTGCATTGCTCAGAATCCTTGCTTGTGACTGTCGTAGTCCAATCTTCGAGAACAACATTGGGATGTGGGAGTAACAATATGAAAGATTTTGTTAATTGTATTTATGTTCATTCCTCAAACAACAATGACTCAAATTCAACCCTAATTCACACTCCATCTTCTTCCTCTTATTCTTACGTTCTAAATTTCTCCATCCGAAACCTCCGGTTCTCCGAACCCGAAACTCCCAAACCAGTAGCCATCATCACACCATCCCATGCTTCCCAAGTCCAAGCCACAGTTATTTGCTGCAAAAGCCACGGCCTCCAAATTCGAACTCGCAGTGGTGGCCATGACTTTGAAGGCCGTTCTTACGTTGCAAACGTACCATTTGTGTTGATTGATTTGATAAACCTCAATTCCATTACCATCGACGTCGAGGACGAGAGTGCATGGGTTCAATCAGGGGCGACCGTGGGCGAACTATACTTCAGAATTGGTGAGAAAAGTCGAACCCTCGGATTTCCGGCAGGGTTCGCGGCCACAATTGGACTTGGAGGGTTCTTGAGCGGTGGGGGGTTTGGGATGATGGTTAGAAAATATGGTCTTGGAGCGGACAATGTAGTGGATGCTTATGTTGTAGATGGAAATGGAAGAGTTGTAAATAGATATTCAATGGGGGAGGATTTGTTTTGGGCCATTAGAGGAGGTGGAGGAGGAAGCTTTGGGATTGTTTTGGCTTGGAAATTGAGGTTGGTTCAAGTTCCTTCAATTGTTACATCGTTTGCTCTTCATAAAATTTGGGATCAAAATGCAGCCAACTTAATCTATCGTTGGCAATACATTGCGCCATGGGTAGATCAAGATCTTTTCATCTCTGCTTGGGTCACAGCTTCCAATTCAAGCCATGATGGAAGTGGAAGAATTATGGAGGCTTCATTCTTCTCTTTATTTCTTGGAAATGCAACCGAGCTTCTCTCTCTCATGGAGAAGACTTTTCCAGAGCTTGGGCTAAAAAAAGAAGACTGTCTTGAAACGAGTTGGGTTGAATCAATGGCATTTTCAGCAAGTGGATTTGTTTCTGCTAAAAGCTTAGAACTTTTGCTCGATAGAACTCCACTCCACAATGGTAGATACAAAACCAAATCTGATTATGCCACTGAACCCATCTCGGAAACTGTGCTTGAGGGCATGTGGGAAAGGTTCAAAGATGAAGAACTAGAAACAGTGCAACTCATACTGATCCCTTTTGGAGGTAAAACGAATGAAATTTCTGAATCAGAAACCCCCTCCCCACATCGAGCTGGATATCCCATACATATTGGCTACTACCTTACATGGCAACGACCCGACGCCGATTCAAAACACTTGAAGTGGGCTCGAGAGCTTCACAATTACATGACTCCTTTTGTGTCGAAATCGCCTAGAGCAGCATATGTAAATTACAGAGATCTTGACATGGGAACAAACAATGACGACGGGGTCCCGACCAGATGTGAGGAAGCAAGCATTTGGGGGCATCGATACTTTGGGAATAATTTTGAAAGGTTGATGGAAGTGAAAAGGAAGGTGGATCCATTTAACTTCTTCCGGCATGAGCAAAGCATACCACCAGCACCAACAAGTGTAGGAATCTAA 2403 42.61 MTLILLATFSGSGSPLAAIDNLGQVAESLAYPSDAISIIISWVSVFNFFGRIFSGFISENIMMKWKLPRPLTFFVAFFIIGVGQLIVAYPSTGSVFIASMVIGFGFGMHAMLFAIISDLFGLKHYSTLFNCGQLVVPIGSYILNVHVVGRIYDKEALVNGIKLTGRGLICTGAHCFNLSFTILAGATLCGGIIMLVLAYRTREFYQGDVYKKYRDDMWTPPTEMEFSHLDKKKVHVSIKRHHMFSMPPSSGPTNHTDHFVPYVHCSESLLVTVVVQSSRTTLGCGSNNMKDFVNCIYVHSSNNNDSNSTLIHTPSSSSYSYVLNFSIRNLRFSEPETPKPVAIITPSHASQVQATVICCKSHGLQIRTRSGGHDFEGRSYVANVPFVLIDLINLNSITIDVEDESAWVQSGATVGELYFRIGEKSRTLGFPAGFAATIGLGGFLSGGGFGMMVRKYGLGADNVVDAYVVDGNGRVVNRYSMGEDLFWAIRGGGGGSFGIVLAWKLRLVQVPSIVTSFALHKIWDQNAANLIYRWQYIAPWVDQDLFISAWVTASNSSHDGSGRIMEASFFSLFLGNATELLSLMEKTFPELGLKKEDCLETSWVESMAFSASGFVSAKSLELLLDRTPLHNGRYKTKSDYATEPISETVLEGMWERFKDEELETVQLILIPFGGKTNEISESETPSPHRAGYPIHIGYYLTWQRPDADSKHLKWARELHNYMTPFVSKSPRAAYVNYRDLDMGTNNDDGVPTRCEEASIWGHRYFGNNFERLMEVKRKVDPFNFFRHEQSIPPAPTSVGI* 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8533575 8539576 + CsaV3_1G013230.1 Csa01g01323 515820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01323 800 SUPERFAMILY MFS general substrate transporter 3 203 IPR036259 -
Csa01g01323 800 SUPERFAMILY FAD-binding/transporter-associated domain-like 292 511 IPR036318 GO:0050660
Csa01g01323 800 Pfam FAD binding domain 341 477 IPR006094 GO:0050660
Csa01g01323 800 ProSiteProfiles PCMH-type FAD-binding domain profile. 336 510 IPR016166 GO:0071949
Csa01g01323 800 Gene3D - 399 793 IPR016169 -
Csa01g01323 800 Pfam Berberine and berberine like 733 792 IPR012951 GO:0016491|GO:0050660
Csa01g01323 800 PANTHER OS08G0158400 PROTEIN 288 793 - -
Csa01g01323 800 Gene3D MFS general substrate transporter like domains 1 206 IPR036259 -
Csa01g01323 800 Gene3D - 513 729 - -
Csa01g01323 800 Gene3D - 286 394 IPR016167 -
Csa01g01323 800 PANTHER BERBERINE BRIDGE ENZYME-LIKE 18 288 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01323 Csa-Chr1:8533575 Csa01g02639 Csa-Chr1:23369173 0 dispersed
Csa01g01323 Csa-Chr1:8533575 Csa01g02598 Csa-Chr1:22984429 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01323 - - csv:101203901 1018.84