Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01325 ATGGCCGATAAATTTCGCCCTTTCCTCAAACAACTTGCAACAGGACGATGGTTTTCAGTTTTTGCTTCCTTCCTAATCATGATCGGCGCGGGTTCCACGTACGTTTTCGGTACATACTCAAAAGCAATCAAAACTCAATTCGATTACAGCCAAACCGAAATCAACACATTAGGATTCGCCAAAGATCTTGGTTCCAATCTCGGAGTTTTTGCTGGCCTTCTCGGCGAAATAGCTCCACCGTGGGTTCTGTTTGTCGTCGGTTCATTTCTCAATTTCTTTAGCTATTTCATGATTTGGCTCTCCCTTACTCACCGTATCGCTAAACCACAGCTATGGCAAATGTTCATCTATATTTGCTTAGCTGCTAATTCACAAAACTTCGCTAACACCGCCGTTTTAGTAACGAGTGTAAGAAACTTCCCTGATCGACGAGGTATAATTCTTGGACTTCTTAAAGGATTCGTCGGAATTGGAGGTGCCATTGTAACTCAATTCTATTTAGCTCTTCATGGCCATGACAATCCAGCTAGTTTGGTGCTTCTTCTGGCATGGTTTCCCACTTTAATTTCTTCTTTATTTTTCCTTTCCATCCGAACAATCAATATGCGTAGACATCCCGAAGAACTCCGAGTTCTTTACCATTTGCTTTATGTCTCAATCATTCTTGCTTTGTTTCTCTTATTTCTTACCGTTTCACAAAAACAAGCTGCATTTTCTTCAGCTGGGTATGCTAGTGGAGCTGCTGTAATTATTGGGTTACTTCTTATGCCTCTATTAATAGCCGTTAGAGAAGAACTCATGCTCTTCAAGCTCAATGGACAAACAGACAAAAACTCATCTCCCGCTGTTTTCACTCCGGAAATGAAAACTTCATCTAGTTCTACAACTAAAAACAATGAATCCTTATCCCCAATTGAAGAAATTCCCGAATTGAATTCACCAACATGTTGCTCAAACATAGTCAACAAGCCAGAACGTGGAGAAGATTTCAGTATCTTACAAGCTCTGTTTAGTAAAGACATGGGGCTTATTTTCGTTGCAACACTTTGTGGGTGTGGTTCATCAATTGCTGCCATTGATAACATCGGCCAAATCGGCGAATCGCTTGGATATCCATCTAAATCCATAAGTATCTTTGTTTCCTGGGTTTCAATATTCAGCTTCTTCGGCAGAGTAGGCTCTGGTTTCATCTCTGAAACACTTATGACAAAATACAAATTACCTCGTCCTTTAATGTTTGCTTTCTCCCATCTTCTCACTTGTATCGGTATGTTGTTCGTCGCCTTCCCGTATCCCGGCTCCATCTATGTAGCTTCGTTGACAATCGGGTTTGGATTCGGAGCGCAAGTACCGATAATTTTTGCAATACTTTCAGAGCTTTTTGGGTTGAAATATTATGCAACAATCTTCAATTGTGCTCAATTAGCAGTCCCAATCGGATCATATGTACTAAATGTGGATGTCATTGGGAAATTGTATGATATTGAAGCAACAAAAGATGGTGGCATTAGGGATGGGAATGGATTGACTTGCAAGGGAGCTCATTGTTTTAGTGGATCATTCTTGGTTTTGGCTGTGGTGGTGTTGATTGGAGGTTTGGCCTCACTTGTGTTGGCATTTAGAACAAGAAATTTTTACAAAGGAGATGTTTATAAGAAGTATAGAGAAGATATGTGGATTCCTCAATCAGATATGGAATTTTATTGTTTGGATGACAAGAAAAAGGTTGTTAACGATAATTTCCCAAGGATTGTTATGCCCCCTAAGTATAATTTTCTCAATGTAATATAG 1791 39.87 MADKFRPFLKQLATGRWFSVFASFLIMIGAGSTYVFGTYSKAIKTQFDYSQTEINTLGFAKDLGSNLGVFAGLLGEIAPPWVLFVVGSFLNFFSYFMIWLSLTHRIAKPQLWQMFIYICLAANSQNFANTAVLVTSVRNFPDRRGIILGLLKGFVGIGGAIVTQFYLALHGHDNPASLVLLLAWFPTLISSLFFLSIRTINMRRHPEELRVLYHLLYVSIILALFLLFLTVSQKQAAFSSAGYASGAAVIIGLLLMPLLIAVREELMLFKLNGQTDKNSSPAVFTPEMKTSSSSTTKNNESLSPIEEIPELNSPTCCSNIVNKPERGEDFSILQALFSKDMGLIFVATLCGCGSSIAAIDNIGQIGESLGYPSKSISIFVSWVSIFSFFGRVGSGFISETLMTKYKLPRPLMFAFSHLLTCIGMLFVAFPYPGSIYVASLTIGFGFGAQVPIIFAILSELFGLKYYATIFNCAQLAVPIGSYVLNVDVIGKLYDIEATKDGGIRDGNGLTCKGAHCFSGSFLVLAVVVLIGGLASLVLAFRTRNFYKGDVYKKYREDMWIPQSDMEFYCLDDKKKVVNDNFPRIVMPPKYNFLNVI* 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8547255 8549045 - CsaV3_1G013250.1 Csa01g01325 515822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01325 596 SUPERFAMILY MFS general substrate transporter 14 544 IPR036259 -
Csa01g01325 596 Pfam Nodulin-like 16 261 IPR010658 -
Csa01g01325 596 CDD MFS_Mch1p_like 15 531 - -
Csa01g01325 596 Gene3D MFS general substrate transporter like domains 312 572 IPR036259 -
Csa01g01325 596 MobiDBLite consensus disorder prediction 280 302 - -
Csa01g01325 596 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 6 557 - -
Csa01g01325 596 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 6 557 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01322 Csa-Chr1:8532943 Csa01g01325 Csa-Chr1:8547255 1.69E-57 dispersed
Csa01g01325 Csa-Chr1:8547255 Csa01g01330 Csa-Chr1:8581674 0 dispersed
Csa01g01324 Csa-Chr1:8541270 Csa01g01325 Csa-Chr1:8547255 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01325 - - csv:101204389 1147.88