Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01328 ATGGATCAAGCAGGAAAGCAGGGAGAGGATGAATTTAAAGTGGAGGTGGAATTGTTAAGTCGGCTTCATTCGCCATATTTGTTGGCATTGCTCGGGTACTGCTCAGATAACAATCATAAATTGCTCGTATACGAGTTCATGGCCAACGGCGGTCTGCAAGAACATCTATACCCTGTTGGCAGTTCAAATTCCATCAGCGTTAAGTTGGACTGGGAAACACGACTGAGAGTTGCACTCGAAGCTGCCAAAGGTTTGGAGTATTTACATGAACATGTATGCCCCCCAGTAATTCACAGGGATTTCAAGAGCAGCAATGTTCTGTTGGACAAAAATCTTCATGCTAAGGTTTCTGATTTTGGATTGGCAAAGATCGGCTCAGACAAAGCCGGGGGTCACGTCTCCACTCGAGTTTTGGGAACACAAGGATATGTTGCTCCTGAGTATGCGCTAACAGGGCATTTAACAACAAAATCAGACGTTTATAGTTATGGGGTTGTCCTCTTGGAGCTGCTCACAGGTAGAGTCCCAGTTGATATGAAGAAAACTCCTGGGGAAGCTTCTCTTGTTTCTTGGGCTTTGCCGAGGCTGACCGACAGGGAGAGAGTGATGCATATAATGGACCCTGCATTGGAGGGTCAGTACTCTATGAAAGATGTTGTTCAAGTGGCAGCAATTGCAGCAATGTGTGTTCAACCGGAGGCAGATTACAGGCCGCTGATGGCCGATGTTGTCCAGTCATTAGTCCCACTTGTGAGAAATTATAGGACAACTTCAAAGATTATTGGTAGCAGTTCTAGTTCCAGCGCTACCAAGTCGCCTGCACCCCACGACAATGCTAGTTCGGGAGACTGA 852 46.6 MDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPVGSSNSISVKLDWETRLRVALEAAKGLEYLHEHVCPPVIHRDFKSSNVLLDKNLHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKKTPGEASLVSWALPRLTDRERVMHIMDPALEGQYSMKDVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVRNYRTTSKIIGSSSSSSATKSPAPHDNASSGD* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8562065 8566250 - CsaV3_1G013280.1 Csa01g01328 515825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01328 283 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Csa01g01328 283 SUPERFAMILY Protein kinase-like (PK-like) 6 247 IPR011009 -
Csa01g01328 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Csa01g01328 283 ProSiteProfiles Protein kinase domain profile. 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01328 283 PANTHER OS01G0750732 PROTEIN 1 279 - -
Csa01g01328 283 Gene3D Transferase(Phosphotransferase) domain 1 48 268 - -
Csa01g01328 283 PANTHER OS07G0227300 PROTEIN 1 279 - -
Csa01g01328 283 MobiDBLite consensus disorder prediction 261 283 - -
Csa01g01328 283 Pfam Protein tyrosine and serine/threonine kinase 4 247 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01328 Csa-Chr1:8562065 Csa01g02799 Csa-Chr1:24642337 5.75E-126 dispersed
Csa01g01328 Csa-Chr1:8562065 Csa01g02931 Csa-Chr1:25716837 1.13E-88 transposed
Csa01g01328 Csa-Chr1:8562065 Csa03g03235 Csa-Chr3:29698154 7.13E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77800 PF07714 PK_Tyr_Ser-Thr 6.10E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01328 - - csv:101204636 545.428