Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01332 ATGGTTGCACAACTACCCCCCAGATCCGACGCCGGCCACTCCTGCCGTCCACTCCAATTCCCTTTGCAGGTCATCACCGGTCGCTGGTTCACCGTCTTCGCTACATTTTTAATCATGGCTGGCGCCGGTGCTACCTATCTCTTCGGTGTCTACTCCAAACAGATCAAATCCGCACTTGGGTATGATCAAACTACTTTGAATCTGATGGGCTTTTTCAAAGATCTGGGTGCTAACGTCGGCGTGTTGTCTGGTTTAGTGGCGGAGGTTACGCCCACTTGGTTCGTTCTTCTTCTTGGCTCCGCCTTGAACTTCACCGGCTACTTCATGATTTGGCTTGCCGTCAGCGGCAGAATCGCCAAGCCCAAAGTCTGGCAAATGTGTCTCTACATTTGTGTTGGAGCTAATTCCCAGAATTTTGCTAATACCGGCGCTTTGGTTACTTGTATCCAGAATTTTCCCGAGAGTCGCGGCGCTATGATGGGTCTTTTGAAGGGTTTCACAGGGCTTAGCGGCGCTATTCTCACGGAGATTTATAGGGCCGTTTACGCCGACGATGCCACGGCGTTGATTCTACTTATTGGGTGGCTTCCGGCGGCGATTTCCGTCGTTTTTGTTTTCACCATTCGGAGGCTTAGATCAGAGAGACAACCGAATGAGAAGAGGGTTTTTTACCATTTCCTTTACATCTCAATTGGGCTAGCGGTTTTCATCATGATTATGAATATTGTTCAGAAGAAAGTTCAATTCAATCATACAGCTTATGCTTCAAGTGCTACCGTGATCTGCGTTTTTCTGTTTCTTCCTCTGTTAGTTGTGATCCGTGAAGAACTTCGTATCTGGAATACAAAGAAATCTACCTCAGTTCCAATCGAAAGCCCACAACCAAAACCAATCGATGAACCCAAAATCATAACAGAAGAATCAAAACAAATCACTGAGATCCAAAAACAAAACCTAGCAACACCACCACCAGAGTCCTGTTTCTCCAACATTTGTCAAAAACCACCCAGAGGAGACGATTACACAATCCTTCAAGCACTTCTCAGCATCGATATGTTCGTTCTATTCGTCGCAACATTCTGTGGATTAGGTACAAGCTTAACCGCAGTTGACAATTTAGGACAAATCGGTGAATCACTCGGCTACCCATTAAAAACAGTAAGCTCATTCGTTTCGTTAGTAAGCATTTGGAATTACTTCGGCAGAATATTCGCCGGATTCGTTTCCGAATCCCTTCTCGCAAGATTCAAATTCCCAAGACCACTAATGATGACATTAGTTCTTCTCCTCTCTTGCGTCGGCCAACTCTTAATCGCATTCCCAGTTCCGGGTTCTGTCTACATAGCTTCAGTAATAATCGGATTCTCCTTCGGCGCACAGCTTCCACTGCTTTTCGCCATAATCTCTGAACTCTTTGGACTGAAATATTTCTCCACTTTATTCAATTGTGGGCAAATAGCAAGCCCATTGGGATCGTACATTCTGAATGTGAAGGTGGCGGGAATGTTGTACGATATGGAAGCTTTGAAGCAGTTGAAGGAAAAGGGGTTGGATAGATCGGCGGTGAAGGAATTGATATGTATGGGGAAGCAATGTTACAGGAAATCATTTTCAATAACGGCGATTGTTACGTTTGTTGGAGCAATGGTTTCGTTGGTATTGGTGATGAGAACGAGGGAGTTTTACAAAGGGGATATTTACAAAAAGTTCAGGGAAGAAGAAATGAAGAAAGAGGAGATGGTCATCAACGGCGGAGGAGAAGTTACTGCTCGGGAATCTAAGTGA 1785 45.1 MVAQLPPRSDAGHSCRPLQFPLQVITGRWFTVFATFLIMAGAGATYLFGVYSKQIKSALGYDQTTLNLMGFFKDLGANVGVLSGLVAEVTPTWFVLLLGSALNFTGYFMIWLAVSGRIAKPKVWQMCLYICVGANSQNFANTGALVTCIQNFPESRGAMMGLLKGFTGLSGAILTEIYRAVYADDATALILLIGWLPAAISVVFVFTIRRLRSERQPNEKRVFYHFLYISIGLAVFIMIMNIVQKKVQFNHTAYASSATVICVFLFLPLLVVIREELRIWNTKKSTSVPIESPQPKPIDEPKIITEESKQITEIQKQNLATPPPESCFSNICQKPPRGDDYTILQALLSIDMFVLFVATFCGLGTSLTAVDNLGQIGESLGYPLKTVSSFVSLVSIWNYFGRIFAGFVSESLLARFKFPRPLMMTLVLLLSCVGQLLIAFPVPGSVYIASVIIGFSFGAQLPLLFAIISELFGLKYFSTLFNCGQIASPLGSYILNVKVAGMLYDMEALKQLKEKGLDRSAVKELICMGKQCYRKSFSITAIVTFVGAMVSLVLVMRTREFYKGDIYKKFREEEMKKEEMVINGGGEVTARESK* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8623617 8625946 + CsaV3_1G013320.1 Csa01g01332 515829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01332 594 Pfam Nodulin-like 28 273 IPR010658 -
Csa01g01332 594 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 13 579 - -
Csa01g01332 594 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 13 579 - -
Csa01g01332 594 SUPERFAMILY MFS general substrate transporter 28 561 IPR036259 -
Csa01g01332 594 Gene3D MFS general substrate transporter like domains 347 563 IPR036259 -
Csa01g01332 594 CDD MFS_Mch1p_like 27 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01316 Csa-Chr1:8495015 Csa01g01332 Csa-Chr1:8623617 0 dispersed
Csa01g01317 Csa-Chr1:8505918 Csa01g01332 Csa-Chr1:8623617 0 dispersed
Csa01g01332 Csa-Chr1:8623617 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa02g01375 Csa-Chr2:13204393 Csa01g01332 Csa-Chr1:8623617 3.45E-103 dispersed
Csa06g02620 Csa-Chr6:23040506 Csa01g01332 Csa-Chr1:8623617 0 dispersed
Csa01g01330 Csa-Chr1:8581674 Csa01g01332 Csa-Chr1:8623617 0 proximal
Csa01g01332 Csa-Chr1:8623617 Csa01g01333 Csa-Chr1:8627887 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01332 - - csv:101217765 1161.75