Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01336 ATGGGTGATGTTGAAGGTTCTCCAGGAAGCTCAATGCATGGAGTGACTGGAAGAGAACAAACCTTTGCATTCTCTGTAGCTTCCCCGATCGTCCCAACTGACACCACGGCTAAATTTGCATTACCGGTCGACTCGGAGCATAAAGCTAAGGTTTTCAGGATATGGTCTCTAGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTCACATGCTTTGTGTCCACCTTCGCAGCCGCCCCTCTCGTCCCCATCATTCGCGACAACCTCAACCTGACGAAAGTCGACATCGGGAACGCTGGAGTTACATCTGTTTCTGGGAGTATCTTCTCTCGTCTTGTGATGGGGGCTGTGTGTGACCTTCTTGGACCACGCTATGGATGTGCGTTTTTGATAATGTTGTCGGCTCCGACGGTGTTTTGTATGTCGTTTGTGTCGAATGCTGCTGGTTACATAGCGGTTAGATTCATGATAGGGTTTTCGCTAGCGACGTTTGTGTCGTGTCAGTATTGGATGAGTACAATGTTTAATAGTCAGATAATAGGGCTTGTGAACGGGACAGCAGCTGGGTGGGGTAATATGGGAGGAGGAGCAACTCAATTAATAATGCCATTGTTGTATGAGGTTATTCAGAGAGCTGGTGCTACTCCTTTTACTGCTTGGAGGATCGCTTTCTTCATTCCTGGTTTCCTTCATGTTCTTATGGGCATTTTGGTTTTGACTCTTGGTCAAGACTTGCCTGATGGTAACCTTGCTAGTCTTCAGAAGAAGGGAAACGTTGCCAAAGACAAATTCTCCAATGTCTTGTGGTATGCTGTGACCAATTATCGAACTTGGATCTTCGTCCTCCTCTATGGCTACTCCATGGGGGTCGAGCTTTCCACCGATAACGTCATTGCTGAATATTTCTACGATAGGTTCGATCTAAAGCTTCACACAGCGGGAATCATTGCAGCAACATTCGGGATGGCGAATCTAGTGGCTAGACCGTTTGGAGGGTATGCGTCTGACGTAGCAGCGCGATACTTTGGGATGAGAGGAAGGTTGTGGACACTATGGATCCTACAAACATTTGGGGGAGTGTTTTGCATGTGGCTGGGTAAAGCAACCAAGTTGCCAATAGCAATAGCGGCAATGATATTGTTCTCAATAGGAGCACAAGCAGCATGTGGAGCAACATTTGGTATAATTCCATTCATATCAAGGAGATCTCTGGGAATAATATCAGGACTAACAGGAGCTGGTGGAAACTTTGGAAGTGGTTTAACACAATTAGTATTCTTCTCAACAACAAAATACTCAACTGACACAGGATTGTTTTTGATGGGAATAATGATTGTTTGTTGCACTCTTCCAGTAACTTTGGTTCATTTCCCTCAATGGGGAAGCATGTTTCTACCACCAACTAAACATGTTGAAAAATCAACTGAAGAGTTTTATTATGGTTCTGAATGGACTGAGGATGAAAAGAAGAAAGGTTTGCATCAACAAAGTATTAAGTTTGCTGAGAACAGCAGATCTGAACGTGGTAGACGTGTTGCTTCAGCTCCAACTCCACCAAATACAACTCCTACTCATGTTTGA 1593 44.82 MGDVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFRIWSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSNAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYEVIQRAGATPFTAWRIAFFIPGFLHVLMGILVLTLGQDLPDGNLASLQKKGNVAKDKFSNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDVAARYFGMRGRLWTLWILQTFGGVFCMWLGKATKLPIAIAAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDTGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVASAPTPPNTTPTHV* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8647199 8649422 + CsaV3_1G013360.1 Csa01g01336 515833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01336 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Csa01g01336 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Csa01g01336 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Csa01g01336 530 Gene3D MFS general substrate transporter like domains 58 254 IPR036259 -
Csa01g01336 530 SUPERFAMILY MFS general substrate transporter 58 460 IPR036259 -
Csa01g01336 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
Csa01g01336 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Csa01g01336 530 MobiDBLite consensus disorder prediction 490 513 - -
Csa01g01336 530 MobiDBLite consensus disorder prediction 490 530 - -
Csa01g01336 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01336 Csa-Chr1:8647199 Csa05g02316 Csa-Chr5:25626003 0 dispersed
Csa01g01336 Csa-Chr1:8647199 Csa01g01337 Csa-Chr1:8648404 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01336 K02575 - csv:101218006 1049.27