Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01337 ATGGGTGATGTTGAAGGTTCTCCAGGAAGCTCAATGCATGGAGTGACTGGAAGAGAACAAACCTTTGCATTCTCTGTAGCTTCCCCGATCGTCCCAACTGACACCACGGCTAAATTTGCATTACCGGTCGACTCGGAGCATAAAGCTAAGGTTTTCAGGATATGGTCTCTAGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGGTTTCCTTCTTCACATGCTTTGTGTCCACCTTCGCAGCCGCCCCTCTCGTCCCCATCATTCGCGACAACCTCAACCTGACGAAAGTCGACATCGGGAACGCTGGAGTTACATCTGTTTCTGGGAGTATCTTCTCTCGTCTTGTGATGGGGGCTGTGTGTGACCTTCTTGGACCACGCTATGGATGTGCGTTTTTGATAATGTTGTCGGCTCCGACGGTGTTTTGTATGTCGTTTGTGTCGGATGCTGCTGGTTACATAGCGGTTAGATTCATGATAGGGTTTTCGCTAGCGACGTTTGTGTCGTGTCAGTATTGGATGAGTACAATGTTTAATAGTCAGATAATAGGGCTTGTGAACGGGACAGCAGCTGGGTGGGGTAATATGGGAGGAGGAGCAACTCAATTAATAATGCCATTGTTGTATGAAGTTATTCAGAGAGCTGGTGCTACTCCTTTTACTGCTTGGAGGATCGCTTTCTTCATTCCTGGTTTCCTTCATGTTCTTATGGGCATTTTGGTTTTGACTCTTGGTCAAGACTTGCCTGATGGTAACCTTGCTAGTCTTCAGAAGAAGGGAAACGTTGCCAAAGACAAATTCTCCAATGTCTTGTGGTATGCTGTGACCAATTATCGAACTTGGATCTTCGTCCTCCTCTATGGCTACTCCATGGGGGTCGAGCTTTCCACCGATAACGTCATTGCCGAATATTTCTACGATAGGTTCGATCTAAAGCTTCACACAGCGGGAATCATTGCAGCAACATTCGGGATGGCGAATCTAGTGGCTAGACCGTTTGGAGGGTATGCGTCTGACGTAGCAGCGCGATACTTTGGGATGAGAGGAAGGTTGTGGGCACTATGGATCCTACAAACATTTGGGGGAGTGTTTTGCATGTGGCTGGGTAAAGCAACCAAGTTGCCAATAGCAATAGCGGCAATGATATTGTTCTCAATAGGAGCACAAGCAGCATGTGGAGCAACATTTGGTATAATTCCATTCATATCAAGGAGATCTCTGGGAATAATATCAGGACTAACAGGAGCTGGTGGAAACTTTGGAAGTGGTTTAACACAACTAGTATTCTTCTCAACAACAAAATACTCAACTGACACAGGATTGTTTTTGATGGGAATAATGATTGTTTGTTGCACTCTTCCAGTAACTTTGGTTCATTTCCCTCAATGGGGAAGCATGTTTCTACCACCAACTAAACATGTTGAAAAATCAACTGAAGAATTTTATTATGGTTCTGAATGGACTGAGGATGAAAAGAAGAAAGGTTTGCATCAACAAAGTATTAAGTTTGCTGAGAACAGCAGATCTGAACGTGGTAGACTTGGAGCTGAAGCAACACGTCTACCACGTTCAGATCTGCTGTTCTCAGCAAACTTAATACTTTGTTGA 1611 44.94 MGDVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFRIWSLANPHMRTFHLSWVSFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYEVIQRAGATPFTAWRIAFFIPGFLHVLMGILVLTLGQDLPDGNLASLQKKGNVAKDKFSNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDVAARYFGMRGRLWALWILQTFGGVFCMWLGKATKLPIAIAAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDTGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRLGAEATRLPRSDLLFSANLILC* 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8648404 8657123 - CsaV3_1G013370.1 Csa01g01337 515834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01337 536 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Csa01g01337 536 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 520 IPR044772 GO:0015112
Csa01g01337 536 SUPERFAMILY MFS general substrate transporter 58 460 IPR036259 -
Csa01g01337 536 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Csa01g01337 536 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Csa01g01337 536 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Csa01g01337 536 Gene3D MFS general substrate transporter like domains 58 254 IPR036259 -
Csa01g01337 536 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 520 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01337 Csa-Chr1:8648404 Csa05g02316 Csa-Chr5:25626003 0 dispersed
Csa01g01336 Csa-Chr1:8647199 Csa01g01337 Csa-Chr1:8648404 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01337 K02575 - csv:101218244 1041.57