Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01352 ATGGAGAAATCTGGGTATGGTCGCGATGGAATTTTCCGGTCGTTACGGCCTCCGCTTGTCTTTCCTAAAGATCCCAATCTCTCCATGATTTCTTTCCTCTTCAGAAATTTATTGTCTTATCCAAATAGACTAGCCATTGTTGATGCGGAATCTTCAAATTCTGTCTCGTATTCCCAGCTTAAAGCCTTGGCAATTAGGGTATCCAATGGTTTGATCCAATTGGGTATTGAGAAAAATGACGTGGTGTTGATTTTTGCTCCAAATTCAGTTCAATTCACCATTTGTTTCATTGGGGTTATTGCCATTGGGGCTATTGTAACTACTTGTAATCCTGTATACACGGTTTCTGAGCTAACTAAGCAAGTTAGAGATGCTAAACCTAAACTCGTGATATCTGTTGCTGAATTGTGGGATAAAGTGAAGAATCTAAACATCCCAACTGTGTTACTAGACCAGCAAATTCCTTCAGCAATTCATTCTCCTAAAATATTGTGTTTCAATGATTTGGTGAACATGGCTGGTGATAAATCTGGGTCTGAGTTTCCAATTGTTGGGGTGAAGCAGAGTGATACAGCTGCACTTCTATATTCATCAGGAACAACAGGAGCTAGTAAGGGTGTGATTTTGACTCACGGAAACTTCATAGCATCTTCTTTGATGATAACAATGGATCAGACGTTTAATGGAGAGGAACATGGCGTATTTCTGAACTTCTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCTCAACTGCAGAAAGGAAACACCGTTGTCTCTATGCCAAAGTTTAATCTTGAGAAAGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATCTGTGGGTTGTGCCGCCTGTGGTGCTTGCTTTGGCAAAGCAGAGTCTGGTGAAGAAATACAACCTTTCATCCGTGAAGCGTGTCGGTTCAGGGGCTGCACCTCTTGGGAGGGAATTAATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTATCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTTGCTTTGGAGAATCCAGCAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTTGAGGCTAAAATAGTCAGTGTAGATACTCTAAAGCCTCTACCTCCTAATCAATATGGCGAGATACATGTTCGAGGACCAAACATGATGCTCGGTTATTTCAACAATCCAGAAGCCACCAAGCAAACTATTGATAAACATGGATGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAATGGTCAGCTTTATGTTGTCGACCGGATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAGCTTGAAGCACTGCTGGTTTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTGCCCTGATGAAGAAGCTGGAGAAGTTCCAATTGCTTATGTTGTTCGATCTGCCAATAGTTCTTTGACCGAAGAGGACATCCTTAAATTCATTGCTGATCAGGTTTCTCCTTATAAAAGGTTAAGAAGAGTGACATTCATCAGCAGTGTCCCCAAGTCTGTTTCTGGTAAAATTCTGAGGAGAGAACTCATTGAGAAAGTAAGAGCTAAAATCTGA 1632 42.28 MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNLLSYPNRLAIVDAESSNSVSYSQLKALAIRVSNGLIQLGIEKNDVVLIFAPNSVQFTICFIGVIAIGAIVTTCNPVYTVSELTKQVRDAKPKLVISVAELWDKVKNLNIPTVLLDQQIPSAIHSPKILCFNDLVNMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHGNFIASSLMITMDQTFNGEEHGVFLNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQGYGMTETCGVVALENPAVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMLGYFNNPEATKQTIDKHGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPCPDEEAGEVPIAYVVRSANSSLTEEDILKFIADQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKVRAKI* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8805865 8809246 - CsaV3_1G013520.1 Csa01g01352 515849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01352 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Csa01g01352 543 CDD 4CL 21 535 - -
Csa01g01352 543 Gene3D - 10 440 IPR042099 -
Csa01g01352 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
Csa01g01352 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Csa01g01352 543 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 542 - -
Csa01g01352 543 Gene3D - 441 542 IPR045851 -
Csa01g01352 543 Pfam AMP-binding enzyme 38 445 IPR000873 -
Csa01g01352 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01352 Csa-Chr1:8805865 Csa03g02957 Csa-Chr3:28139017 2.56E-136 dispersed
Csa03g00588 Csa-Chr3:5079458 Csa01g01352 Csa-Chr1:8805865 5.60E-30 transposed
Csa03g02735 Csa-Chr3:26182940 Csa01g01352 Csa-Chr1:8805865 3.75E-137 transposed
Csa04g01368 Csa-Chr4:13814305 Csa01g01352 Csa-Chr1:8805865 4.58E-18 transposed
Csa04g02685 Csa-Chr4:26054439 Csa01g01352 Csa-Chr1:8805865 2.01E-153 transposed
Csa05g02765 Csa-Chr5:28373355 Csa01g01352 Csa-Chr1:8805865 7.08E-143 transposed
Csa06g03851 Csa-Chr6:30549914 Csa01g01352 Csa-Chr1:8805865 4.83E-31 transposed
Csa01g01352 Csa-Chr1:8805865 Csa03g03295 Csa-Chr3:30061837 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01352 K01904 - csv:101220141 1056.59