Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01353 ATGGCTTCCTTATCAGTGGCCACCATTTTATCCCGTCTCTCTATTTTGGGGTTTGCATCAAAGTCTTCTTTTAAAAACCAATTATTGATCTCCTCCAATAGTAGTAGAATCGAGAGATTGAATCGATTGAGACCCTTTTCCATGGCTTCGTCTCCTAAAGAATCTCCAGCCAACAATCCAGGACTTCAGGCTACCCCTGATGATGCCACTAAAGGTTACATCATGCAACAGACTATGTATCGGATTAAGGATCCTAAAGTCAGTCTCGACTTCTATTCTCGAGTTCTGGGAATGTCATTACTCAAGAGGCTGGATTTCCCTGAAATGAAGTTTAGTTTGTACTTTATGGGTTATGAGGATACAGCATCTGCACCAGAAAGCTCAGTTGATAGAACAGTGTGGACTTTTGGTCGAAAGGCTACGATTGAGTTAACACACAACTGGGGTACTGAAAGTGACCCTGAATTCAAAGGATATCATAATGGGAACTCAGATCCTCGTGGCTTTGGACACATTGGCATAACTGTTGATGACACAATTAAGGCATGTGAAAGATTTGAACGCTTAGGTGTGGAATTTGTTAAAAAACCAGATGACGGCAAGATGAAAGGAATTGCATTTATCAAGGATCCTGATGGCTACTGGATTGAAATCTTTGATCTCAAAACTGTTGGAAAAGTTACTTCTGAGGCTGCTTGA 699 41.06 MASLSVATILSRLSILGFASKSSFKNQLLISSNSSRIERLNRLRPFSMASSPKESPANNPGLQATPDDATKGYIMQQTMYRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPESSVDRTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDTIKACERFERLGVEFVKKPDDGKMKGIAFIKDPDGYWIEIFDLKTVGKVTSEAA* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8811864 8819621 + CsaV3_1G013530.1 Csa01g01353 515850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01353 232 CDD GlxI_Zn 75 219 - -
Csa01g01353 232 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 76 218 IPR004360 -
Csa01g01353 232 ProSitePatterns Glyoxalase I signature 2. 162 178 IPR018146 GO:0004462|GO:0046872
Csa01g01353 232 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 69 220 IPR029068 -
Csa01g01353 232 TIGRFAM glyox_I: lactoylglutathione lyase 63 226 IPR004361 GO:0004462|GO:0046872
Csa01g01353 232 MobiDBLite consensus disorder prediction 51 65 - -
Csa01g01353 232 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 74 221 IPR037523 -
Csa01g01353 232 PANTHER LACTOYLGLUTATHIONE LYASE 30 228 - -
Csa01g01353 232 ProSitePatterns Glyoxalase I signature 1. 77 98 IPR018146 GO:0004462|GO:0046872
Csa01g01353 232 PANTHER LACTOYLGLUTATHIONE LYASE GLYOXALASE I 30 228 - -
Csa01g01353 232 MobiDBLite consensus disorder prediction 48 68 - -
Csa01g01353 232 Gene3D - 49 226 IPR029068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01353 Csa-Chr1:8811864 Csa02g00109 Csa-Chr2:758978 1.06E-11 dispersed
Csa07g01978 Csa-Chr7:19411864 Csa01g01353 Csa-Chr1:8811864 1.66E-06 dispersed
Csa01g01353 Csa-Chr1:8811864 Csa06g03511 Csa-Chr6:28666313 1.14E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01353 K01759 - csv:101220380 384.8