Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01359 ATGACCCGTTTCATGGAATCGGAAAAGCTCTTAATTTCACGAGGAAACCCTAGAAATTCTGTTTACCCATCTGACCGCCCAATCCCCACCACCAGCGGCAGGACTATGCCCAATGAGTTGCCACAAAAGCCTGCCCCTTCCATAGCTCACCGGTTTAGAGCTCAGTTAAAGCAGCGGGATGATGAATTTAGGGTTTCTGGCCATGATGTTGTGCCCCTTCCTACCGCTGAGGATATTGTGCAGTTGTATGACCTCATGTTGTCGGAGCTCACTTTTAATTCGAAGCCCATCATTACGGATCTCACTGTTCTTGCTGATGAGCAGAGAGAACATGGGAAGGGCATTGCCGACTTAATTTGTGCGCGGATTCTCGAGGTTCCAGTTGACCAAAAACTTCCTTCATTATATCTATTAGACAGCATTGTTAAGAATGTTGGGCACGAGTACATTAGTTATTTCGCGTCTCGTTTACCTGAGGTGTTTTGCGAGGCTTACAGGCAAGTTCATCCTAATTTGCACAATGCAATGCGCCACCTCTTTGGGACTTGGGCAACTGTGTTTCCACCATCCATCATTCGGAAGATTGAAGCTCAACTTTCTCAGTTAACAGCCCAAGAGTCATCAGGTTTGACATCCTCAAGGGCTTCTGAATCTCCTCGGCCAACTCATGGTATTCATGTCAATCCAAAATACTTGCGACAGCTGGAACACTCAGTGGTGGATAAACATAGCCAAGATTCAAGAGGGACCTCAGCTATAAAAGTTCATGATAAAAAGCTTGCTTCTGGATATGAAGAGTATGACTACGATCATGCGGATGCTCTTGAACATGGTGGACCTCAAGGATTTCATTCAATGGGAAGCATGGGCCATGATTCTTTTTCCCTTGGAACAAATAAAGCAAATATAAAGCTAGCAAAATCATCTCTGTCTTCAAGAATTGGACCCCATAGACCTCTACAATCAGTTGGTGATGAACATGAAACGGTCAGAGCCTCACCCTCGCAGAATGTCTATGATTATGAAGGTTCGAAGATGATTGATAGAAATGAGGATACCAATAAATGGAGGAGAAAGCAATATCCTGACGATAATCTGAATGGACTTGAAAGTACTTCTTCATATAATATTAGAAATGGACATGCACTTGAGGGACCAAGAGCTTTAATCGAAGCATATGGAAGTGATAAAGGAAAAGGTTATTTAAATGACAATCCACCCCAAGCTGAACATTTTTCTATCAATGTTATAGACAACAAGGCAACTCCGGTAACATGGCAGAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCTGATAGAGGCCGAAATAATGATATGTTGAAACCACCTGTCCCACCTTCAAGATTTAGGACAAGATCAGGATTTGAAAGATCAAATGCTATGCCTATAGAGCCAGGAATGAGAAGCAATTGGTCTAGTCCGGTTCGGCTACCGGGTATTGATTCCTCCATAGTTATTGAAGATGTGGTCCATTCAACACCTGATAATTGGAATATGCACAATCACATTTCTCAGACATCTCAGAACCTCATGAACAATAAAGGACAGGGAAGAAATTTCCAGATGCCTATGTTGGGGAGAGGCATAACTTCCTCTGTTGGTGAGAAGATGTCTCCTTATGGTGACAAGCTTTTGACCAATGATGCTTTACATAGGCCCACTAACATTGCTTCGAGATTGGGTTCTTCTGGTCTCGACTCTAGCATGGAGTCGCAATCAATTGTACAATCTATGGGCCCAAGGCATCCTCTGAATCTTTCTAACTCTTGCCCACCCTCTAGACCTCCAATTTTTCCTGTACCAAGACACAATGCAAGTCAGTTTGAGTCTTTAAATGGTAGCAATTCTTTCATGAATTGTGCAAATAGGACTTTTTTGCCTGAGCAGCAGATGAATAACTTGAGAAATAAGGAGCTAAGTCTTACAACTAAGTCGCCACAAGTTGGCAACCAACATACTGGGCATATTCCTTTAACTCGGGGAAACCAATTGCAGGGCATGCCTTTAAAACCGCAATTTCTACCATCTCAGGACATGCAAGATAATTTTAGTGGATCAGCAGTACCTCCAGTGTTACCACATTTAATGGCACCATCTTTGAGTCAAGGATACATTTCACAAGGACATCGCCCTGCTATTAGTGAGGGTTTGTCAAGTTCTGCCCCTATTGGACAATGGAATTTGTCTGTTCATAATAGCTCCAGTAACCCTTTGCATTTACAAGGAGGGCCGCTGCCACCTCTTCCACCTGGGCCTCATCCTACTTCTGGTCCGACTATACCTATCTCTCAAAAGGTTCCTGGACAGCAACCGGGAACTGCAATTTCTGGGCTAATAAGTTCTCTCATGGCCCGGGGTTTAATCTCATTAAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTAGAATTCAATCCAGATGTACTCAAGGTGCGACATGAATCTGCAATCACTGCTCTATATGCTGATCTTCCTCGACAATGCATGACCTGTGGTCTTCGATTCAAGACCCAGGAAGAGCATAGTAATCATATGGATTGGCATGTCACTAAAAATCGTATGTCGAAAAGTAGGAAGCAAAAGCCTTCTCGCAAATGGTTTGTAAGTATTAGCATGTGGCTTAGCGGTGCAGAGGCTTTAGGAACGGAGGCAGTTCCAGGATTTTTGCCTGCTGAGGTTGTTGTAGAGAAAAAAGATGATGAAGAACTGGCTGTTCCTGCTGACGAGGATCAGAAGACATGTGCATTATGTGGAGAACCTTTCGAGGATTTTTACAGTGATGAAACAGAGGAGTGGATGTATCGGGGTGCTGTCTACATGAATGCACCTGATGGACAAACAGCCGGCATGGATATTTCTCAGTTAGGGCCCATAGTGCATGCTAAATGCAGGACCGAAACTAATGTGGTTCCCTCTGAAAGTTTTGACCAAGATGAAGGGGGAGTTAGTGAAGAGGGTAATCGAAGAAAACGATTGCGGAGCTAG 3024 43.62 MTRFMESEKLLISRGNPRNSVYPSDRPIPTTSGRTMPNELPQKPAPSIAHRFRAQLKQRDDEFRVSGHDVVPLPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARILEVPVDQKLPSLYLLDSIVKNVGHEYISYFASRLPEVFCEAYRQVHPNLHNAMRHLFGTWATVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKHSQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGPQGFHSMGSMGHDSFSLGTNKANIKLAKSSLSSRIGPHRPLQSVGDEHETVRASPSQNVYDYEGSKMIDRNEDTNKWRRKQYPDDNLNGLESTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINVIDNKATPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPPVPPSRFRTRSGFERSNAMPIEPGMRSNWSSPVRLPGIDSSIVIEDVVHSTPDNWNMHNHISQTSQNLMNNKGQGRNFQMPMLGRGITSSVGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSSMESQSIVQSMGPRHPLNLSNSCPPSRPPIFPVPRHNASQFESLNGSNSFMNCANRTFLPEQQMNNLRNKELSLTTKSPQVGNQHTGHIPLTRGNQLQGMPLKPQFLPSQDMQDNFSGSAVPPVLPHLMAPSLSQGYISQGHRPAISEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQKVPGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVPGFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQTAGMDISQLGPIVHAKCRTETNVVPSESFDQDEGGVSEEGNRRKRLRS* 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8871150 8878626 - CsaV3_1G013590.1 Csa01g01359 515856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01359 1007 MobiDBLite consensus disorder prediction 15 38 - -
Csa01g01359 1007 MobiDBLite consensus disorder prediction 981 1007 - -
Csa01g01359 1007 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Csa01g01359 1007 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 42 982 - -
Csa01g01359 1007 Gene3D - 74 201 IPR008942 -
Csa01g01359 1007 MobiDBLite consensus disorder prediction 441 465 - -
Csa01g01359 1007 MobiDBLite consensus disorder prediction 15 44 - -
Csa01g01359 1007 MobiDBLite consensus disorder prediction 755 769 - -
Csa01g01359 1007 MobiDBLite consensus disorder prediction 206 226 - -
Csa01g01359 1007 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 42 982 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Csa01g01359 1007 SUPERFAMILY ENTH/VHS domain 75 203 IPR008942 -
Csa01g01359 1007 SMART 558neu5 78 200 IPR006569 -
Csa01g01359 1007 CDD CID_Pcf11 80 199 - -
Csa01g01359 1007 Pfam CID domain 87 194 IPR006569 -
Csa01g01359 1007 MobiDBLite consensus disorder prediction 747 769 - -
Csa01g01359 1007 ProSitePatterns Zinc finger C2H2 type domain signature. 841 861 IPR013087 -
Csa01g01359 1007 MobiDBLite consensus disorder prediction 312 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01359 Csa-Chr1:8871150 Csa03g03379 Csa-Chr3:30500311 1.48E-32 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30716 PF04818 CID 2.40E-11 CL0020 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01359 K14400 - csv:101206311 2001.48