Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01369 ATGGAACATAGTTATGGGTTTGAACAGCATGTTGCTCAACAAAGTCGGCGTGATAAGTTAAGAGTTCCGCAGAATTATTTGCGTGTCGGGGAAGTATCGAGAAATTCTGATGAACAATTGAGTTTTCATAACTCGGAGCATTTGGGGGTTGATTTGGATCTTGTTAGAATTCAAAGTTTTAACAAGGATGCGATTTTGCCTCATGATCACTTGTCTTTGTTACCTTCGGAAATGATAAATTTCTCAAGAGATTCGAACGTAAGGGATATGATGTTGCGTCAAGAACTGGAAGACCCGGCTCAATGCAGTAGACAAATTGTGACAGATAATAGTATTGATTATTGGAAAAGTTCTCATCCAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAATTGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACCTCTTCCTCTTTTAACAATACATCCAACCAGACATTCAATCAGGATGGACAAAAACGAATAGGAGGAGAATTGCATTTGCCTCAAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCTATTCGAACTCAGGGTCTTGAAATGACATCCATTGTGCAGCATAATTTTACCGAGATCAACCAAACTGCTGCTTGTGAAGGCAGTGGGAACGAGCTTGCTCTTCTTCCGGTGTACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTGCTGGTTCTTGGACTGATAGAACTTACTATAATTGCCGCAGCTGGATTGGTGAATTGGGGTCTATTGCTAGAAAAACCGATGAAGAGTTGAGGTCTTTGATGAGTGATTCCAATCCACAAGGTCTAGCCCTGTCATTGTCTTCGAATCCACCGTCTAAACTGCCCACCACACAGTTTGAAGAATCAGAGGAATTGCAGGAAAGTATAACCGTGTTAAAAAATTCACAAGAATCCAAAACAATCAAATCTGAGAGTTTGTGTAAATTACCAAAGCCAACATCTATTGGAACTAAAAATTATGGGAAATCTTTTCAAGATGTGATGGGAGTTCCTGTGAATCCATATAGAAACACAGGTCCTCTTGGCCCCTTTACTGGGTTTGTCCAACCCTGTGAGGTATTTGAGAAAACACCCGGGGAAGTTGGTGTCTCAACGGCTCTTAATGCATTTAGAAATGAGGTTGTTAAGGAAAGTAGTTCATGTGCAGATGCCTCTAAATTCTGCGGTTCAAATGAATCAAATGTTAGTGGAGTTGGAAGCATCTCTTCTGATTCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTGTATATGCTTGAGGAGGTTTGCAGAAGATACAAACAATATCATCAACAAATGCAAATGGTAGTGAATTCCTTCGAATCAGTAGCTGGTCTTAGTTCCGCAACGCCGTACATTTCCCTTGCGCTCAAGACAGTCTCAAGACACTTCCGGTCTCTAAAGAATGCCATCTCTGAACAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCTCCTTCTGCTGGGACAAGCGGCAGCAAAGGCGATGCAAATTCAGCTAGGTTGAAATACATGGAACAGAGCTTCCAAAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTCGAATCCCAAAATGCATGGAGGCCACAGAGAGGTTTGCCTGAACGTGCTGTAGCGATTCTTAGAGCATGGCTCTTCGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGGTGTCGAATTGGTTCATAAATGCTCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGAAGAAACGAACAACAAAAGCCATGGTACGAGAGATGGAAGTTCTACATTAGAAAACACAGCCGGTTGGACCAGTAACGAACACCAGCCTCTAAAAAACCAGGGTGTTGCAAATGAAATGTCTACTCATCATTTGCAGTGCTTTGGGGTAGATTCCACTAGTGGCGACCAAAATGGACTCGGCAGCAGCGCCCAACCATGGGATCAAGGCAAACAATCAAAATTGAACAATGGGATTCAGTCCAACATGGAAAGGGAACTGACGGGGTTCATGCCATATCAGGCCAGTGCATCCGAGGTTGGAGGACTTGGTGCTGTCTCTCTAACATTAGGCCTTCGCCACAGAGTCGAGAGTGCACACCATCAACAGCAACGGCATCAATTACAGCAACAAGATGACCAACTAATTCGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGGTAA 2358 43.04 MEHSYGFEQHVAQQSRRDKLRVPQNYLRVGEVSRNSDEQLSFHNSEHLGVDLDLVRIQSFNKDAILPHDHLSLLPSEMINFSRDSNVRDMMLRQELEDPAQCSRQIVTDNSIDYWKSSHPSCDWVVNCGSNSFGGELLNQEVTDSTVYSLKPTCIGFQTSSSFNNTSNQTFNQDGQKRIGGELHLPQIYQNTLQDVVTSASIRTQGLEMTSIVQHNFTEINQTAACEGSGNELALLPVYRDQPNVLPYDSAGSWTDRTYYNCRSWIGELGSIARKTDEELRSLMSDSNPQGLALSLSSNPPSKLPTTQFEESEELQESITVLKNSQESKTIKSESLCKLPKPTSIGTKNYGKSFQDVMGVPVNPYRNTGPLGPFTGFVQPCEVFEKTPGEVGVSTALNAFRNEVVKESSSCADASKFCGSNESNVSGVGSISSDSHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVNSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYMEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMEETNNKSHGTRDGSSTLENTAGWTSNEHQPLKNQGVANEMSTHHLQCFGVDSTSGDQNGLGSSAQPWDQGKQSKLNNGIQSNMERELTGFMPYQASASEVGGLGAVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIRHYGSEMIHDFVG* 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9067362 9072428 + CsaV3_1G013780.1 Csa01g01369 515866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01369 785 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 752 - -
Csa01g01369 785 Pfam Associated with HOX 410 504 IPR006563 -
Csa01g01369 785 Gene3D - 566 628 - -
Csa01g01369 785 MobiDBLite consensus disorder prediction 638 663 - -
Csa01g01369 785 MobiDBLite consensus disorder prediction 285 306 - -
Csa01g01369 785 SMART prehox3 391 505 IPR006563 -
Csa01g01369 785 ProSiteProfiles 'Homeobox' domain profile. 560 623 IPR001356 GO:0003677
Csa01g01369 785 SUPERFAMILY Homeodomain-like 564 629 IPR009057 -
Csa01g01369 785 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 35 752 - -
Csa01g01369 785 MobiDBLite consensus disorder prediction 688 708 - -
Csa01g01369 785 Pfam Homeobox KN domain 580 619 IPR008422 GO:0003677|GO:0006355
Csa01g01369 785 SMART HOX_1 563 627 IPR001356 GO:0003677
Csa01g01369 785 CDD homeodomain 563 624 IPR001356 GO:0003677
Csa01g01369 785 MobiDBLite consensus disorder prediction 645 663 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01369 Csa-Chr1:9067362 Csa02g01490 Csa-Chr2:14284494 6.99E-72 dispersed
Csa01g01369 Csa-Chr1:9067362 Csa03g03494 Csa-Chr3:31283814 6.70E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30718 PF07526 POX 1.70E-34 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01369 - - csv:101214235 1523.06