Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01393 | ATGACGGAGCAAGTGGAAGCTCTTGAGCGAGTCTATGCGGAATGCCCTAAACCAAGCTCTTTGCGCCACCAACAGCTAATTCGTGATTGCCCCATTTTAGCCAACATCGAATCTAAGCATATCAAAGTCTGGTTCCAAAACCACATATGTAGAGAGAAACAAATAAAAGAGGCTTCTTGTTTACCGTCACTAAACAGTAAATTGACGGCCATAAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTCGTCTGTGAGAATGGGTACATGCACCAACATTTGCAAACTACTAATGCACCAGCAGCAACAACTACTGATGCAGCTTGTGACTCAGTGGCTACTACGCCCCAACATTCACTTAGAGATGCTAGTAGCCCTACTGGACTCTTGTCTATTGCAAAGGAGATTTTGGTAGCCTTCCTATTAAAGGCTATAGGAACTGTTGTCGATTGGGTCCAGATGCCTGGGATGAAGGAGTGTTTTGTCCAACCTAGTTCGGATTCGGTGGGAATTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCCGGAGTCTTCTTCGGCGTCTTCTCAAGTTTCCGACTTCTCATTCTTCGACCTCTTGTCAAATCTGAGACATCCATTTCGTCCATCTCCAATCTCAAATCTTGATCCTCCTCCCTGGAAATCTAGTGCGAAAATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAATTCCTGATGCTAATTTCAAATTGATTAGAGGTTATCCTCTGAATGGGGATGCTGGCTGTAGCTGCTCGGCCCCAATGTCGATGGAAAACAGTTTTACTATTCCTTATCTTTTTGGGAAGTCATATGGGTCTTTGTGTGGTTCCTTCTTGAGGTCTTTCTCGAGGTCGGGCAATCAATATCCGGAAGCCTTCAAAAATATGAGCTCTCAAATGGAATTTGTGCCTTTGAGAAAACATGCATCTTCAACTTTTTCAGCATTCCAAAGTTCTAGGCCACATTTTTTTCAGTTGGCAGAAACTGCAGCTCCTTTTTCTAGTAGGGGCATTGCTACGACAAGCTCGATGGAATCAGCTCTACAGGGATCCCCTGCAGTTGATTCTGTTATACCACCTCGCATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACGAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTATCTCAACATTGAAAGGTATTGTGATAGCCAGACGAAATGCCGGTCTAAACTCAACTTTTAGAATAAGGAGGGTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTTCCTCTATACTCACCGAACATAAAAGAGATTAAGGTATTGGAGAAGAAGAAAGTGCGCAGAGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCAGTAG | 1503 | 43.38 | MTEQVEALERVYAECPKPSSLRHQQLIRDCPILANIESKHIKVWFQNHICREKQIKEASCLPSLNSKLTAINKLLMEENDRLQKQVSQLVCENGYMHQHLQTTNAPAATTTDAACDSVATTPQHSLRDASSPTGLLSIAKEILVAFLLKAIGTVVDWVQMPGMKECFVQPSSDSVGILPFHKVAVEWPESSSASSQVSDFSFFDLLSNLRHPFRPSPISNLDPPPWKSSAKMQGFRRINQLVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENSFTIPYLFGKSYGSLCGSFLRSFSRSGNQYPEAFKNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPLYSPNIKEIKVLEKKKVRRAKLYYLRDKMNALKKQ* | 501 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 9473552 | 9480749 | - | CsaV3_1G014020.1 | Csa01g01393 | 515890 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01393 | 500 | Gene3D | - | 1 | 59 | - | - | |
Csa01g01393 | 500 | PRINTS | Ribosomal protein L19 signature | 454 | 477 | IPR001857 | GO:0003735|GO:0005840|GO:0006412 | |
Csa01g01393 | 500 | PRINTS | Ribosomal protein L19 signature | 395 | 424 | IPR001857 | GO:0003735|GO:0005840|GO:0006412 | |
Csa01g01393 | 500 | Pfam | Ribosomal protein L19 | 398 | 494 | IPR001857 | GO:0003735|GO:0005840|GO:0006412 | |
Csa01g01393 | 500 | SUPERFAMILY | Homeodomain-like | 3 | 59 | IPR009057 | - | |
Csa01g01393 | 500 | Pfam | Homeodomain | 2 | 54 | IPR001356 | GO:0003677 | |
Csa01g01393 | 500 | PANTHER | RIBOSOMAL PROTEIN L19 | 288 | 498 | IPR001857 | GO:0003735|GO:0005840|GO:0006412 | |
Csa01g01393 | 500 | TIGRFAM | rplS_bact: ribosomal protein bL19 | 399 | 494 | IPR001857 | GO:0003735|GO:0005840|GO:0006412 | |
Csa01g01393 | 500 | Gene3D | - | 380 | 500 | IPR038657 | - | |
Csa01g01393 | 500 | CDD | homeodomain | 3 | 53 | IPR001356 | GO:0003677 | |
Csa01g01393 | 500 | ProSiteProfiles | 'Homeobox' domain profile. | 1 | 55 | IPR001356 | GO:0003677 | |
Csa01g01393 | 500 | PANTHER | 39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL | 288 | 498 | - | - | |
Csa01g01393 | 500 | Coils | Coil | 65 | 92 | - | - | |
Csa01g01393 | 500 | SUPERFAMILY | Translation proteins SH3-like domain | 397 | 495 | IPR008991 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g01393 | Csa06g01195 | CCT | |
Csa01g01393 | Csa06g01195 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01393 | Csa-Chr1:9473552 | Csa06g01195 | Csa-Chr6:10113736 | 2.16E-77 | dispersed | |
Csa01g01393 | Csa-Chr1:9473552 | Csa01g02627 | Csa-Chr1:23252566 | 1.01E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30719 | PF01245 | Ribosomal_L19 | 1.50E-31 | CL0107 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01393 | K09338 | K02884 | csv:101216309 | 439.499 |