Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01393 ATGACGGAGCAAGTGGAAGCTCTTGAGCGAGTCTATGCGGAATGCCCTAAACCAAGCTCTTTGCGCCACCAACAGCTAATTCGTGATTGCCCCATTTTAGCCAACATCGAATCTAAGCATATCAAAGTCTGGTTCCAAAACCACATATGTAGAGAGAAACAAATAAAAGAGGCTTCTTGTTTACCGTCACTAAACAGTAAATTGACGGCCATAAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTCGTCTGTGAGAATGGGTACATGCACCAACATTTGCAAACTACTAATGCACCAGCAGCAACAACTACTGATGCAGCTTGTGACTCAGTGGCTACTACGCCCCAACATTCACTTAGAGATGCTAGTAGCCCTACTGGACTCTTGTCTATTGCAAAGGAGATTTTGGTAGCCTTCCTATTAAAGGCTATAGGAACTGTTGTCGATTGGGTCCAGATGCCTGGGATGAAGGAGTGTTTTGTCCAACCTAGTTCGGATTCGGTGGGAATTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCCGGAGTCTTCTTCGGCGTCTTCTCAAGTTTCCGACTTCTCATTCTTCGACCTCTTGTCAAATCTGAGACATCCATTTCGTCCATCTCCAATCTCAAATCTTGATCCTCCTCCCTGGAAATCTAGTGCGAAAATGCAAGGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAATTCCTGATGCTAATTTCAAATTGATTAGAGGTTATCCTCTGAATGGGGATGCTGGCTGTAGCTGCTCGGCCCCAATGTCGATGGAAAACAGTTTTACTATTCCTTATCTTTTTGGGAAGTCATATGGGTCTTTGTGTGGTTCCTTCTTGAGGTCTTTCTCGAGGTCGGGCAATCAATATCCGGAAGCCTTCAAAAATATGAGCTCTCAAATGGAATTTGTGCCTTTGAGAAAACATGCATCTTCAACTTTTTCAGCATTCCAAAGTTCTAGGCCACATTTTTTTCAGTTGGCAGAAACTGCAGCTCCTTTTTCTAGTAGGGGCATTGCTACGACAAGCTCGATGGAATCAGCTCTACAGGGATCCCCTGCAGTTGATTCTGTTATACCACCTCGCATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACGAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTATCTCAACATTGAAAGGTATTGTGATAGCCAGACGAAATGCCGGTCTAAACTCAACTTTTAGAATAAGGAGGGTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTTCCTCTATACTCACCGAACATAAAAGAGATTAAGGTATTGGAGAAGAAGAAAGTGCGCAGAGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCAGTAG 1503 43.38 MTEQVEALERVYAECPKPSSLRHQQLIRDCPILANIESKHIKVWFQNHICREKQIKEASCLPSLNSKLTAINKLLMEENDRLQKQVSQLVCENGYMHQHLQTTNAPAATTTDAACDSVATTPQHSLRDASSPTGLLSIAKEILVAFLLKAIGTVVDWVQMPGMKECFVQPSSDSVGILPFHKVAVEWPESSSASSQVSDFSFFDLLSNLRHPFRPSPISNLDPPPWKSSAKMQGFRRINQLVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENSFTIPYLFGKSYGSLCGSFLRSFSRSGNQYPEAFKNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPLYSPNIKEIKVLEKKKVRRAKLYYLRDKMNALKKQ* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9473552 9480749 - CsaV3_1G014020.1 Csa01g01393 515890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01393 500 Gene3D - 1 59 - -
Csa01g01393 500 PRINTS Ribosomal protein L19 signature 454 477 IPR001857 GO:0003735|GO:0005840|GO:0006412
Csa01g01393 500 PRINTS Ribosomal protein L19 signature 395 424 IPR001857 GO:0003735|GO:0005840|GO:0006412
Csa01g01393 500 Pfam Ribosomal protein L19 398 494 IPR001857 GO:0003735|GO:0005840|GO:0006412
Csa01g01393 500 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Csa01g01393 500 Pfam Homeodomain 2 54 IPR001356 GO:0003677
Csa01g01393 500 PANTHER RIBOSOMAL PROTEIN L19 288 498 IPR001857 GO:0003735|GO:0005840|GO:0006412
Csa01g01393 500 TIGRFAM rplS_bact: ribosomal protein bL19 399 494 IPR001857 GO:0003735|GO:0005840|GO:0006412
Csa01g01393 500 Gene3D - 380 500 IPR038657 -
Csa01g01393 500 CDD homeodomain 3 53 IPR001356 GO:0003677
Csa01g01393 500 ProSiteProfiles 'Homeobox' domain profile. 1 55 IPR001356 GO:0003677
Csa01g01393 500 PANTHER 39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL 288 498 - -
Csa01g01393 500 Coils Coil 65 92 - -
Csa01g01393 500 SUPERFAMILY Translation proteins SH3-like domain 397 495 IPR008991 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01393 Csa06g01195 CCT
Csa01g01393 Csa06g01195 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01393 Csa-Chr1:9473552 Csa06g01195 Csa-Chr6:10113736 2.16E-77 dispersed
Csa01g01393 Csa-Chr1:9473552 Csa01g02627 Csa-Chr1:23252566 1.01E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30719 PF01245 Ribosomal_L19 1.50E-31 CL0107 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01393 K09338 K02884 csv:101216309 439.499