Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01406 ATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAA 267 44.19 MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQILAK* 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9613960 9620753 - CsaV3_1G014150.1 Csa01g01406 515903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01406 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 86 - -
Csa01g01406 88 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538
Csa01g01406 88 Gene3D - 1 84 IPR036858 GO:0016538
Csa01g01406 88 SMART CKS_2 3 72 IPR000789 GO:0016538
Csa01g01406 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Csa01g01406 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Csa01g01406 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Csa01g01406 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Csa01g01406 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Csa01g01406 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Csa01g01406 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 86 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01406 Csa06g01245 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01406 Csa-Chr1:9613960 Csa06g01245 Csa-Chr6:10466855 9.85E-35 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01406 K02219 - csv:101204120 176.407