Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01423 ATGGCCCTCTCTTTATCCCTACAACTCATTCGCTTCCCTCCTCAACCTCCATCCCCATCCTCTCACCTCGCCTCTCTCTCCCGCTTCTTCCCATCTCCATGCCTTTCCTCTTTCGCTCCGTCCCGAGACTATGCCGTCAAGTTATCTTCCAGAACAAAGTGTTTCTCCATGTCCACTGAGGAGGACAAGTGGAGTGAATCTGATGCGTTTGTCTCCGATGTCGACGAAGGGGGAGATCTTGAGGATGACATTGATATTAGTGTTCGGGAAGACAGCCCTGTGGCCACTGCTGCTTCTGCGCAGAGGATTTCTTCTTCACCCAGTGATTATCTCTCGCTTGCGATTCGTGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGCTAATGGAACCGTATCCACCAGGAAGGTTAACAGACGGCAGCTGTTGAAGTCAAGTGGGCTTCGTCCTCGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTACGTGAACATGCTATTTTGCTTAATCTGGGATCGTTGCGAGCAATAGCCATGCAGGATTGTGTCCTCATATTCGATCATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGGGTGCCAGCAATGCCATTTGAACTCGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAACGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACACTGGTTGAATTAGGTTCCAGAGCAGGGGCTCTGAGACAAATGCTTCTTGATCTTCTGGAGGATCCGCTAGAAATACGGCGCATCTGTATTATGGGTAGAAATTGCACGTTGAATAAAAGAAATGATGATGTGGAGTGCACTCTTCCTTTGGATAAGCAGATTGCTGATGACGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTAAGCTCACGGAGACTAGAGGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCTTTTTGGTTAACAACAGCTGGGATAATCGTCGGTGCTGTTGTTGCATTCTTTCTCATGTATTCATATCTCAGAGATAGGAGAATCCTATAG 1350 45.26 MALSLSLQLIRFPPQPPSPSSHLASLSRFFPSPCLSSFAPSRDYAVKLSSRTKCFSMSTEEDKWSESDAFVSDVDEGGDLEDDIDISVREDSPVATAASAQRISSSPSDYLSLAIREQVYEVLEVKANGTVSTRKVNRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDHNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPLEIRRICIMGRNCTLNKRNDDVECTLPLDKQIADDEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRDRRIL* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9745712 9767048 - CsaV3_1G014320.1 Csa01g01423 515920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01423 449 Pfam CorA-like Mg2+ transporter protein 239 438 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Csa01g01423 449 Gene3D - 112 196 - -
Csa01g01423 449 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 37 449 IPR039204 -
Csa01g01423 449 CDD Mrs2_Mfm1p-like 122 448 IPR039204 -
Csa01g01423 449 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 37 449 - -
Csa01g01423 449 Gene3D Magnesium transport protein CorA, transmembrane region 199 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01423 Csa-Chr1:9745712 Csa04g01293 Csa-Chr4:13105092 1.54E-149 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01423 K16075 - csv:101219314 820.076