Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01423 ATGGCCCTCTCTTTATCCCTACAACTCATTCGCTTCCCTCCTCAACCTCCATCCCCATCCTCTCACCTCGCCTCTCTCTCCCGCTTCTTCCCATCTCCATGCCTTTCCTCTTTCGCTCCGTCCCGAGACTATGCCGTCAAGTTATCTTCCAGAACAAAGTGTTTCTCCATGTCCACTGAGGAGGACAAGTGGAGTGAATCTGATGCGTTTGTCTCCGATGTCGACGAAGGGGGAGATCTTGAGGATGACATTGATATTAGTGTTCGGGAAGACAGCCCTGTGGCCACTGCTGCTTCTGCGCAGAGGATTTCTTCTTCACCCAGTGATTATCTCTCGCTTGCGATTCGTGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGCTAATGGAACCGTATCCACCAGGAAGGTTAACAGACGGCAGCTGTTGAAGTCAAGTGGGCTTCGTCCTCGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTACGTGAACATGCTATTTTGCTTAATCTGGGATCGTTGCGAGCAATAGCCATGCAGGATTGTGTCCTCATATTCGATCATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGGGTGCCAGCAATGCCATTTGAACTCGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAACGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACACTGGTTGAATTAGGTTCCAGAGCAGGGGCTCTGAGACAAATGCTTCTTGATCTTCTGGAGGATCCGCTAGAAATACGGCGCATCTGTATTATGGGTAGAAATTGCACGTTGAATAAAAGAAATGATGATGTGGAGTGCACTCTTCCTTTGGATAAGCAGATTGCTGATGACGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTAAGCTCACGGAGACTAGAGGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCTTTTTGGTTAACAACAGCTGGGATAATCGTCGGTGCTGTTGTTGCATTCTTTCTCATGTATTCATATCTCAGAGATAGGAGAATCCTATAG 1350 45.26 MALSLSLQLIRFPPQPPSPSSHLASLSRFFPSPCLSSFAPSRDYAVKLSSRTKCFSMSTEEDKWSESDAFVSDVDEGGDLEDDIDISVREDSPVATAASAQRISSSPSDYLSLAIREQVYEVLEVKANGTVSTRKVNRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDHNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPLEIRRICIMGRNCTLNKRNDDVECTLPLDKQIADDEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRDRRIL* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9745712 9767048 - CsaV3_1G014320.1 Csa01g01423 515920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01423 449 Pfam CorA-like Mg2+ transporter protein 239 438 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Csa01g01423 449 Gene3D - 112 196 - -
Csa01g01423 449 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 37 449 IPR039204 -
Csa01g01423 449 CDD Mrs2_Mfm1p-like 122 448 IPR039204 -
Csa01g01423 449 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 37 449 - -
Csa01g01423 449 Gene3D Magnesium transport protein CorA, transmembrane region 199 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01423 K16075 MRS2, MFM1; magnesium transporter - csv:101219314 820.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01423 Csa-Chr1:9745712 Csa04g01293 Csa-Chr4:13105092 1.54E-149 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02968 . 1 448 MRS2 Gene Family AT1G16010 84.8 8.4e-207 716.5
Csa06g02083 . 6 381 MRS2 Gene Family AT1G16010 52.7 1.3e-106 383.6
Csa07g00672 . 37 298 MRS2 Gene Family AT1G16010 51.1 9.4e-57 218.0
Csa02g01103 . 1 366 MRS2 Gene Family AT5G64560 79.3 5.2e-157 550.8
Csa02g01155 . 1 370 MRS2 Gene Family AT5G64560 69.3 8.4e-131 463.8
Csa07g00672 . 1 321 MRS2 Gene Family AT3G19640 63.2 1.6e-94 343.6
Csa07g00673 . 12 183 MRS2 Gene Family AT3G19640 68.0 5.1e-56 215.7
Csa03g01926 . 59 444 MRS2 Gene Family AT3G58970 69.7 3.0e-140 495.4
Csa06g02083 . 6 381 MRS2 Gene Family AT2G03620 68.5 2.2e-135 479.2
Csa03g02968 . 13 448 MRS2 Gene Family AT2G03620 53.4 3.0e-113 405.6
Csa02g01103 . 1 328 MRS2 Gene Family AT5G09690 75.2 3.1e-126 448.4
Csa02g01155 . 1 332 MRS2 Gene Family AT5G09690 66.0 1.4e-110 396.4
Csa03g02968 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.4e-78 288.1
Csa02g01103 . 23 288 MRS2 Gene Family AT5G09720 67.3 5.2e-88 321.2
Csa02g01155 . 34 292 MRS2 Gene Family AT5G09720 62.8 6.4e-78 287.7
Csa03g02968 . 1 448 MRS2 Gene Family AT1G80900 83.3 4.0e-201 697.6
Csa06g02083 . 6 381 MRS2 Gene Family AT1G80900 54.1 1.2e-104 377.1
Csa07g00672 . 37 304 MRS2 Gene Family AT1G80900 50.4 2.7e-56 216.5
Csa01g01423 . 13 448 MRS2 Gene Family AT5G22830 69.4 4.4e-158 554.7
Csa04g01293 . 25 237 MRS2 Gene Family AT5G22830 53.9 2.6e-49 193.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g01423 Csa_Chr01 FPKM 1.332397 1.834883 5.403469 4.813752 2.728657 2.649332 2.364609 0.683388 0.997539 1.148172