Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01424 ATGTCTCGCCGAGGCGGGGGCGGTAGTGGCGGCGGTGGTGGTCGTGGTTCGGGTGGTCGTGGTGGACAGCCCTCTCCGGCTATATCTCGCGGTGGAAGAGGTGGACGAGGCGGACGAGGGGGTGGAGGGAGAGATGGAGGCAGGGTAGGTTATCCAGCCACTCAGCAATTCCATTCTCCGACTCATCAGCCTACTCCGATTGTTTCTCCTCCTCCTCGGCCTACTCCGGTTGCTTCCGCTCCTCCTCCCCAGACGTCAACGGGAGCATCTTCTGCTTCCTCATCGGGAACTGCTACGCTCTTACAGCCTGAGGTTTCTCAGATCGAAGCACAAGTGGAGAAGGTGACACTGACGCCGCAGAACGTTCCGCCGTCTTCATCGAAAGACTTGACTGTGGCGAAGAGGCCGGGATATGGAACCGCTGGTCGAAAAGTTGTTGTTCGTGCCAATCATTTCCTGGTTCAAGTTGCAGACAAAGATCTCCACCATTACGATGTTTCAATCACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGATATAGTAAACCAGCTTGCAAATACGTATAGAGAATCTCATTTAGGTGGAAGATATCTAGCATATGATGGAGGAAAAAGTGTTTATGCTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGGTGCTGGGTCTTCTCAACCAACAAGGAAAGAACGAGAGTTCAAAGTATCTATCAAATTTGCCTCCAAACCAGACCTCCATCATCTACAACAGTTTATACATAGACAGCAGCGAGATGCACCACAGGAGACTATACAAGTTCTTGATGTTGTTTTGAGAACAAAACCATCTGTCGATTACACAGTTGTTGGAAGGTCATTTTTCTCGCATGAACTGGGGCAGCCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTTTATCTTTAAATATAGATGTGTCAGCTAGATCATTTTATGAACCAATCAGTGTGACAGAATATGTTGTTAAACACTTCAACCTAAGGAATCTCTCAAAGCCAATGTCTGATCAGGATTGTCGCAAGATCAAAAAGGTACTTAGAGGAGTGAAGGTTGGATTAACGTGTAGGGAGCATGCCAGGACCTACAAGATTACTGGGATATCATCAGAGCCTGTTAATAGATTAATGTTTACTCTGGATGATCAGAAAACCCGAATCTCTGTTGCACAGTACTTTCATGAAAAATATGGCGTGGCACTCAAATATCCATTTCTACCAGCTATACAAGCTGGTAATGATGCCAAGCCGGTTTATTTGCCTATGGAGGTTTGTAAGATTGTTGCTGGGCAGAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGCTAAGAGCGACTTGTCAGAGACCTCCGAACAGGGAAGATAGTATAGGGAAGATGATTGGTAAGATTGATCATTCTAAAGATGACATTGTCAATGATTTTGGCATTAATGTTGTATCATCAAGGTTATGTGATGTGGGTGCTCGTGTTTTACCGTCCCCGATGCTAAAATATCATGATACTGGCAAAGAATCACGAGTTGATCCAAGGATGGGTCAGTGGAATATGATTAACAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGTGTGAACTTCTCTTCACGGTTGGATCCAGGCTTGCCATCTGAATTTTGCCATCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACACCGCTGTTTCCTGTACGTAATGCACATGCAAACCAAATAGATGGTGCACTTGGAGACATTCATAGCCAGTCTTTAAAAAGTTTGGGACCCCAGGGCAAATCTCTTCAGTTGCTCATAATTATTTTACCTGATATTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAACCTAGGCAAGCACAAAAGCTGAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAACGTTAAGGTTGGGGGAAGAAACAATGTCCTAAATGATGCTATTCAGCGGAAAATTCCACTTGTTTCAGATCGGCCTACAATAATCTTTGGAGCAGATGTAACACACCCACAACCTGGAGAGGACTCCAGTCCTTCAATAGCAGCTGTTGTTGCCTCAATGGACTGGCCCGAGGTAACGAAGTATAGAGGGATTGTTTCAGCTCAGGGCCACCGTGATGAAATTATACAAGATTTGTACAGAGAAGATAAAGATCCTCAAAAAGGGTTGGTGCGTGCAGGAATGATCAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACAAATCTGAAACCGCACAGAATAATATTTTACAGAGATGGTGTAAGTGAAGGACAGTTCTCACAAGTTTTATTTTATGAGGTGGATGCAATTAGGAAGGCATGTGCCTCCCTTGAAGAGGGTTACCAGCCTCCGATTACCTTTGTTGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCTATCAGCGGTGCGGATACTGATCGGAGTGGAAACATCCTTCCAGGTACTGTTGTTGACACCAATATTTGCCATCCAACTGAATTTGATTTCTATTTAAACAGCCATGCCGGCATTCAGGGGACGAGTAGGCCAACACATTATCACGTTTTGTATGATGAAAACAAATTCACTGCCGATGCAATGCAGATGCTTACTAATAATCTTTGCTACACGTATGCAAGGTGCACTCGGTCGGTTTCCATTGTTCCACCAGCATACTATGCACATCTTGCAGCCTTTCGTGCCCGTTATTACATAGAGGGTGATTCATCTGACAGCGGTTCCACAAGTTCAGGTGGTGGGAATGTAGATATTCAACGGCTGCCGAGCATAAAAGAAAATGTGAAGGATGTGATGTTTTATTGTTGA 2955 44.3 MSRRGGGGSGGGGGRGSGGRGGQPSPAISRGGRGGRGGRGGGGRDGGRVGYPATQQFHSPTHQPTPIVSPPPRPTPVASAPPPQTSTGASSASSSGTATLLQPEVSQIEAQVEKVTLTPQNVPPSSSKDLTVAKRPGYGTAGRKVVVRANHFLVQVADKDLHHYDVSITPEVTSKKVCRDIVNQLANTYRESHLGGRYLAYDGGKSVYAAGQLPFSSKEFMIKLVRKDGAGSSQPTRKEREFKVSIKFASKPDLHHLQQFIHRQQRDAPQETIQVLDVVLRTKPSVDYTVVGRSFFSHELGQPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPISVTEYVVKHFNLRNLSKPMSDQDCRKIKKVLRGVKVGLTCREHARTYKITGISSEPVNRLMFTLDDQKTRISVAQYFHEKYGVALKYPFLPAIQAGNDAKPVYLPMEVCKIVAGQRYTKKLNERQVTEMLRATCQRPPNREDSIGKMIGKIDHSKDDIVNDFGINVVSSRLCDVGARVLPSPMLKYHDTGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVRNAHANQIDGALGDIHSQSLKSLGPQGKSLQLLIIILPDISGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRKIPLVSDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQGHRDEIIQDLYREDKDPQKGLVRAGMIRELFIAFRRSTNLKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEEGYQPPITFVVVQKRHHTRLFPISGADTDRSGNILPGTVVDTNICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDSSDSGSTSSGGGNVDIQRLPSIKENVKDVMFYC* 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9770482 9778262 - CsaV3_1G014330.1 Csa01g01424 515921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01424 984 MobiDBLite consensus disorder prediction 115 135 - -
Csa01g01424 984 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 50 969 - -
Csa01g01424 984 SMART Piwi_a_2 632 949 IPR003165 GO:0003676
Csa01g01424 984 MobiDBLite consensus disorder prediction 1 101 - -
Csa01g01424 984 Pfam PAZ domain 365 472 IPR003100 GO:0005515
Csa01g01424 984 ProSiteProfiles Piwi domain profile. 632 949 IPR003165 GO:0003676
Csa01g01424 984 SMART PAZ_2_a_3 344 477 IPR003100 GO:0005515
Csa01g01424 984 Pfam Argonaute linker 1 domain 291 340 IPR014811 -
Csa01g01424 984 Pfam Mid domain of argonaute 539 616 IPR032473 -
Csa01g01424 984 Pfam Piwi domain 634 948 IPR003165 GO:0003676
Csa01g01424 984 SMART DUF1785_2 289 341 IPR014811 -
Csa01g01424 984 CDD PAZ_argonaute_like 341 454 - -
Csa01g01424 984 ProSiteProfiles PAZ domain profile. 342 455 IPR003100 GO:0005515
Csa01g01424 984 SUPERFAMILY PAZ domain 338 495 IPR036085 GO:0005515
Csa01g01424 984 SUPERFAMILY Ribonuclease H-like 628 950 IPR012337 -
Csa01g01424 984 Gene3D paz domain 336 459 - -
Csa01g01424 984 Gene3D - 701 984 IPR036397 GO:0003676
Csa01g01424 984 MobiDBLite consensus disorder prediction 64 81 - -
Csa01g01424 984 Pfam N-terminal domain of argonaute 143 280 IPR032474 -
Csa01g01424 984 CDD Piwi_ago-like 500 948 IPR045246 -
Csa01g01424 984 PANTHER PROTEIN ARGONAUTE 1A 50 969 - -
Csa01g01424 984 Gene3D - 520 695 - -
Csa01g01424 984 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01424 Csa-Chr1:9770482 Csa04g01292 Csa-Chr4:13093657 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01424 K11593 - csv:116403995 1855.49