Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01437 ATGGCGGACGAAGTTCAGAATGATGTGAATGATCAGGTGGCAGATATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCCGACTGATGAGAGTGTTGACAAGTTAGCAGAGAAAACTGAAAGTTTGTCAGTTTCTGATGGATTGGAGGCTGCAACATTTTCTGGACTTAAAAAGAAGAAGAAGAAACCAGTAGAGGCAAGCTCCTTGAATGAAGATGGTGCAGATGCTACGGAGGATTTGGAAGATCAAGCGGGGGAAAATGAAGATCGTGAGGGACTGGTTCTACAGTATCGTTATCCTTGGGAGGGAACTGATCGCGATTATGAATACGAGGAGCTTCTTGGACGGGTATTCAACATCCTTAGAGAGAATAATCCAGAGCTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTACGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTACTAGCTGAACTGGGAACCAGTGGCTCTCTTGATGGACAGCAGAGACTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGATACTATCCTTTCAAAGGAGAACCGGCTTTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAAGCTGGGTTTGTTGCTCGTGTTGGCCGGAGGAACACTGGGACATGA 813 44.53 MADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDESVDKLAEKTESLSVSDGLEAATFSGLKKKKKKPVEASSLNEDGADATEDLEDQAGENEDREGLVLQYRYPWEGTDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9975186 9983461 + CsaV3_1G014460.1 Csa01g01437 515934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01437 270 MobiDBLite consensus disorder prediction 1 99 - -
Csa01g01437 270 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 219 254 IPR016190 GO:0003743|GO:0006413
Csa01g01437 270 MobiDBLite consensus disorder prediction 30 48 - -
Csa01g01437 270 Gene3D - 113 255 - -
Csa01g01437 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT 1 270 - -
Csa01g01437 270 SMART eIF2Bneu4 140 249 IPR002735 GO:0003743|GO:0006413
Csa01g01437 270 MobiDBLite consensus disorder prediction 61 76 - -
Csa01g01437 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 270 IPR045196 GO:0003743|GO:0006413
Csa01g01437 270 Pfam Domain found in IF2B/IF5 139 248 IPR002735 GO:0003743|GO:0006413
Csa01g01437 270 MobiDBLite consensus disorder prediction 80 94 - -
Csa01g01437 270 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 115 222 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00480 Csa-Chr1:3122227 Csa01g01437 Csa-Chr1:9975186 1.68E-25 dispersed
Csa01g01437 Csa-Chr1:9975186 Csa01g01698 Csa-Chr1:13371939 2.54E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01437 K03238 - csv:101220978 528.865