Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01448 ATGGCCATCGTAAACGGAGGCACTCGAACGGTGTCTGCAAATTTGAATATGGGAGGAGAAAAACCGAAGGTGGTCGTGATTATGGGGCCGACTGGTTCTGGGAAGTCACGTCTCGCTATTGATTTGGCTTCTTACTTCCCCGTCGAGATCATCAACGCCGACTCTATGCAGGTTTATCGAGGTTTAGACGTTCTCACAAACAAAGTTCCCCCCGAAGATCAAAATGGAGTACCGCATCATCTTTTAGGTACGGTGAGTCCAGACGTTGAATTCACGGCTAAAGACTTCCGAAATTCTGCTGTTCATGTTATTGATGGCATAATTTCTCGTGGATGCTTGCCAATGATAGTGGGTGGAACAAATTATTATATACAGGCTCTTGTTAGTCCGTTTCTTCTGGATGATTCTGCAGAAAATGTTGGTGGAGGTTGTTCCATTTATCCTGGAGATGAAGGGCTGGGTGTTGATTTGGATGAGTGCAGAGATGGTTTGAAGTATGACCATAACCATCTTAAAGAGATTGATCCAGTTTCGGCTAACAGAATCCACCCTAATAACCACAGAAAAATAAATCAATACCTAAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGAAAGGCTGCTGAGAATTGGGGTCAAGCCGATAGTTTCAAATATGATTGCTGCTTGATATGTGTTGATGCTTCTGTTCCACAACTTGACGAACATGTTGATTCTAGAGTTGACATCATGATGGCTGCTGGATTGCTTGATGAGGTGTATGACATTTACAATCCAAATGCAAACTATACTAGAGGATTGTGTCAAGCTATTGGTGTTCGGGAGTTTGAAGAATTTTTTAGATGTTATATACCTGAAGGTGGATGCAAAAAAGAAAGTGCTGGGCTTAGTCCAAAAAATTTAATGGAGTGCAATGAGATTTTGAAAGAGAATATGAGGTCAATCCTAACTTCACCTTGTGATGGCCAACCCAGTTTGCTACTAAAAGAAGCCGTAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGTCAGAGGAGGCAGCTAAAGAGACTGGAAACTTTGTTTGGATGGAAGATCCACTATGTTGATTCCACGGAATATATAACATGCAAGGTGGAGGATTCATGGACTGCACACGTCGTTGAACCAGCAGTCCAGATAATTAGATCTTTTCTTACAGATGGTTCGGCGACCGAGACAATGAAACCACACAGTTCAGAGCTAATCAAGAAGGACTTGTGGACACAGTATATATGCCAGGCTTGTGGAAATAAAGTATTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGAACACATCGAAAACGAATGTATCGGCTTAGGAAGAAGTGTGAAGGCCTTTCCTTGCTGCACCAGAAACTACCTCCTCAAGAATAA 1425 42.25 MAIVNGGTRTVSANLNMGGEKPKVVVIMGPTGSGKSRLAIDLASYFPVEIINADSMQVYRGLDVLTNKVPPEDQNGVPHHLLGTVSPDVEFTAKDFRNSAVHVIDGIISRGCLPMIVGGTNYYIQALVSPFLLDDSAENVGGGCSIYPGDEGLGVDLDECRDGLKYDHNHLKEIDPVSANRIHPNNHRKINQYLSLYYRTGVLPSTLFQGKAAENWGQADSFKYDCCLICVDASVPQLDEHVDSRVDIMMAAGLLDEVYDIYNPNANYTRGLCQAIGVREFEEFFRCYIPEGGCKKESAGLSPKNLMECNEILKENMRSILTSPCDGQPSLLLKEAVDNVKLNTRRLVRRQRRQLKRLETLFGWKIHYVDSTEYITCKVEDSWTAHVVEPAVQIIRSFLTDGSATETMKPHSSELIKKDLWTQYICQACGNKVLRGAHEWEQHNQGRTHRKRMYRLRKKCEGLSLLHQKLPPQE* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10106395 10122276 - CsaV3_1G014570.1 Csa01g01448 515945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01448 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 403 IPR039657 -
Csa01g01448 474 TIGRFAM miaA: tRNA dimethylallyltransferase 24 286 IPR018022 GO:0008033
Csa01g01448 474 Gene3D Classic Zinc Finger 422 462 - -
Csa01g01448 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 130 IPR027417 -
Csa01g01448 474 Gene3D - 156 211 - -
Csa01g01448 474 Pfam IPP transferase 57 356 - -
Csa01g01448 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 403 - -
Csa01g01448 474 Hamap tRNA dimethylallyltransferase [miaA]. 24 376 IPR018022 GO:0008033
Csa01g01448 474 Gene3D - 22 421 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01448 Csa-Chr1:10106395 Csa03g01377 Csa-Chr3:10342248 2.88E-21 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01448 K00791 - csv:101202758 965.296