Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01464 | ATGGGTTTGAGAAATCACATGGCAGAAGAAAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCCTCTTCTTCCTCTCCCTCCATCCCTCAGACGAGCGTCAAATGCGTTCCAGGGCGATGCCTCCCTTTGTTCACGGAGACGGAGGCCTCGGCGAAGAAGGGCGAAGAAGGGACTCCAGCTGGAGATGGTGAAAGAAAATATTTGGATGTCAAAGCGGAGGATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGTCTCTTATTTTGGTGATGAGAAGAACATGAATGTTTGTGTAAAGAAAGAAGAAATACACAGCTTGAAGAAAAGCTTCTCTAATTTTAATACTCAAGGAAGGTTTTGGATCCCAACACAAGCTCAAATCCTTGTTGGTCCCATGCAATTTGCTTGCTCAATCTGCAACAAATCATTTAATAGATATAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTAAGAGGAACACAACCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAGGACTTCAGAACCCTTCAAACTCATTACAAAAGAAAACATGGCTGTAAGCCATTTATGTGTAGAAAATGTGGAAAATCTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAGAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTAAAAGATCATATTAGATCCTTTGGTAAAGGCCATTCCCCCTGCTCCTCTCTTGATGATGAATGTCTCACTGGTTCTGATGATCAAGAAGATCACTTCTGTTAA | 927 | 42.18 | MGLRNHMAEENIFCLQSPTFIEWLKPHNPSSSSPSIPQTSVKCVPGRCLPLFTETEASAKKGEEGTPAGDGERKYLDVKAEDEDMEKVEVGLHIGLPNVGDVSYFGDEKNMNVCVKKEEIHSLKKSFSNFNTQGRFWIPTQAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGCKPFMCRKCGKSLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDDQEDHFC* | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10319081 | 10322434 | + | CsaV3_1G014730.1 | Csa01g01464 | 515961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01464 | 308 | PANTHER | ZINC FINGER PROTEIN WIP2 | 46 | 306 | IPR043584 | GO:0003700|GO:0010468 | |
Csa01g01464 | 308 | PANTHER | ZINC FINGER PROTEIN WIP3-LIKE | 46 | 306 | - | - | |
Csa01g01464 | 308 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 151 | 178 | IPR013087 | - | |
Csa01g01464 | 308 | Gene3D | Classic Zinc Finger | 150 | 173 | - | - | |
Csa01g01464 | 308 | SMART | c2h2final6 | 198 | 230 | IPR013087 | - | |
Csa01g01464 | 308 | SMART | c2h2final6 | 151 | 173 | IPR013087 | - | |
Csa01g01464 | 308 | SMART | c2h2final6 | 235 | 255 | IPR013087 | - | |
Csa01g01464 | 308 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 153 | 173 | IPR013087 | - | |
Csa01g01464 | 308 | SUPERFAMILY | beta-beta-alpha zinc fingers | 137 | 174 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01464 | Csa-Chr1:10319081 | Csa04g02111 | Csa-Chr4:21785444 | 8.56E-105 | dispersed | |
Csa01g01464 | Csa-Chr1:10319081 | Csa04g01407 | Csa-Chr4:14099785 | 1.37E-101 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30723 | PF13912 | zf-C2H2_6 | 6.10E-05 | CL0361 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01464 | - | - | csv:101208459 | 667.922 |