Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01464 ATGGGTTTGAGAAATCACATGGCAGAAGAAAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCCTCTTCTTCCTCTCCCTCCATCCCTCAGACGAGCGTCAAATGCGTTCCAGGGCGATGCCTCCCTTTGTTCACGGAGACGGAGGCCTCGGCGAAGAAGGGCGAAGAAGGGACTCCAGCTGGAGATGGTGAAAGAAAATATTTGGATGTCAAAGCGGAGGATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGTCTCTTATTTTGGTGATGAGAAGAACATGAATGTTTGTGTAAAGAAAGAAGAAATACACAGCTTGAAGAAAAGCTTCTCTAATTTTAATACTCAAGGAAGGTTTTGGATCCCAACACAAGCTCAAATCCTTGTTGGTCCCATGCAATTTGCTTGCTCAATCTGCAACAAATCATTTAATAGATATAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTAAGAGGAACACAACCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAGGACTTCAGAACCCTTCAAACTCATTACAAAAGAAAACATGGCTGTAAGCCATTTATGTGTAGAAAATGTGGAAAATCTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAGAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTAAAAGATCATATTAGATCCTTTGGTAAAGGCCATTCCCCCTGCTCCTCTCTTGATGATGAATGTCTCACTGGTTCTGATGATCAAGAAGATCACTTCTGTTAA 927 42.18 MGLRNHMAEENIFCLQSPTFIEWLKPHNPSSSSPSIPQTSVKCVPGRCLPLFTETEASAKKGEEGTPAGDGERKYLDVKAEDEDMEKVEVGLHIGLPNVGDVSYFGDEKNMNVCVKKEEIHSLKKSFSNFNTQGRFWIPTQAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGCKPFMCRKCGKSLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDDQEDHFC* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10319081 10322434 + CsaV3_1G014730.1 Csa01g01464 515961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01464 308 PANTHER ZINC FINGER PROTEIN WIP2 46 306 IPR043584 GO:0003700|GO:0010468
Csa01g01464 308 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 46 306 - -
Csa01g01464 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Csa01g01464 308 Gene3D Classic Zinc Finger 150 173 - -
Csa01g01464 308 SMART c2h2final6 198 230 IPR013087 -
Csa01g01464 308 SMART c2h2final6 151 173 IPR013087 -
Csa01g01464 308 SMART c2h2final6 235 255 IPR013087 -
Csa01g01464 308 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Csa01g01464 308 SUPERFAMILY beta-beta-alpha zinc fingers 137 174 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01464 Csa-Chr1:10319081 Csa04g02111 Csa-Chr4:21785444 8.56E-105 dispersed
Csa01g01464 Csa-Chr1:10319081 Csa04g01407 Csa-Chr4:14099785 1.37E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30723 PF13912 zf-C2H2_6 6.10E-05 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01464 - - csv:101208459 667.922