Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01468 ATGGCCAATCAACACTCTGCAACTTTACCGAATTTCCATGGAATAATTCATCATAATCCTTCTCTTCCTTTCATAAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCTATTGTTCTGCAGGGGGTTAAGCTTGGAAATGATGAACCCAAATCTCCAAATTTTGTTACAGGAAGGCCTGCAGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGCACAGATTCAGGCTCAGCTAATATAAACAATACTCTCACAAGCAAAATAGAATTAGAAATGGAATCTGAATCACCAATAAGTAGAAGAACGTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCATCATCTTCTTCATCTTCAACATCTTCAATCAGAATTTGAAGATGATGCTTTGAGAACAGAACCATCATCACAACAAAATCAATCTCCACCCAAAGAAAAGAGAAAAGGAGGTGGTTCAACTTCAGAGAGACAGCTTGATGCCAAGACAATGAGACGATTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGTTTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTCTAGTAGAATCAAACTCTCTCAGCTCGAACAAGACCTCCATAGAGCTCGTTCTCAGGGATTGTTTCTAGGTGCTTGCGGTGGCGTAATGGGTGGCAATATCAGCTCTGGAGCTGCAATATTTGACATGGAGTATGCACGGTGGCTAGACGAGGACCACCGTTTGATGGCGGAGCTACGGGCCGCACTACAGGGGCATCTCCCGGATGGCGATCTTCGGGCAATAGTAGACAGTTACATCTCTCACTACGACGAAATATTTCACCTGAAAGGCGTGGCAGCAAAATCGGACGTGTTTCACTTGATCACCGGAATGTGGATGACTCCAGCGGAGCGTTGTTTCCTGTGGATCGGCGGGTTTAGACCATCCAAACTCATAGAGATGCTAGTTCCACAAATAGACACATTAACAGATCAACAAGCACTGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAAGGCCTTGAGCAGTTGCAGCATTCTCTCATTATCACTATCGCCGGCACCGCGGTCGTGGACGGTATCAATCATATGGCTCTTGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACACTTCATCAATTACATCGAATATTGACAGTACGACAGGCAGCTAGATGTTTTGTGGTAATCGGAGAATATTATGGAAGGCTTCGAGCTCTTAGTTCCTTGTGGGTGTCACGACCAAGAGAGAGCAGCTGTTTGAACGATGAAAGTTCATGCCAAACAACAACAGAGCTGCAAATGATTCAGAATTCCCACACCCATTTCCCAAACTTTTGA 1467 44.04 MANQHSATLPNFHGIIHHNPSLPFINPEGSAFDFGELEEAIVLQGVKLGNDEPKSPNFVTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANINNTLTSKIELEMESESPISRRTCSSNQGLFDQNHHHHLLHLQHLQSEFEDDALRTEPSSQQNQSPPKEKRKGGGSTSERQLDAKTMRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGACGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVDSYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLVPQIDTLTDQQALGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTVRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDESSCQTTTELQMIQNSHTHFPNF* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10392842 10397817 - CsaV3_1G014770.1 Csa01g01468 515965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01468 488 MobiDBLite consensus disorder prediction 150 199 - -
Csa01g01468 488 SMART brlzneu 179 245 IPR004827 GO:0003700|GO:0006355
Csa01g01468 488 MobiDBLite consensus disorder prediction 79 99 - -
Csa01g01468 488 MobiDBLite consensus disorder prediction 154 169 - -
Csa01g01468 488 Pfam bZIP transcription factor 182 223 IPR004827 GO:0003700|GO:0006355
Csa01g01468 488 PANTHER TRANSCRIPTION FACTOR TGA9 55 466 - -
Csa01g01468 488 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351|GO:0043565
Csa01g01468 488 MobiDBLite consensus disorder prediction 170 195 - -
Csa01g01468 488 Gene3D - 182 231 - -
Csa01g01468 488 Coils Coil 202 229 - -
Csa01g01468 488 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Csa01g01468 488 CDD bZIP_HBP1b-like 183 234 - -
Csa01g01468 488 ProSiteProfiles DOG1 domain profile. 248 456 IPR025422 GO:0006351|GO:0043565
Csa01g01468 488 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Csa01g01468 488 SUPERFAMILY Leucine zipper domain 183 225 IPR046347 GO:0003700|GO:0006355
Csa01g01468 488 PANTHER TRANSCRIPTION FACTOR TGA9 55 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01468 Csa-Chr1:10392842 Csa06g01300 Csa-Chr6:10879380 2.00E-129 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30724 PF14144 DOG1 5.80E-31 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01468 K14431 - csv:101204604 967.992