Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01468 | ATGGCCAATCAACACTCTGCAACTTTACCGAATTTCCATGGAATAATTCATCATAATCCTTCTCTTCCTTTCATAAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCTATTGTTCTGCAGGGGGTTAAGCTTGGAAATGATGAACCCAAATCTCCAAATTTTGTTACAGGAAGGCCTGCAGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGCACAGATTCAGGCTCAGCTAATATAAACAATACTCTCACAAGCAAAATAGAATTAGAAATGGAATCTGAATCACCAATAAGTAGAAGAACGTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCATCATCTTCTTCATCTTCAACATCTTCAATCAGAATTTGAAGATGATGCTTTGAGAACAGAACCATCATCACAACAAAATCAATCTCCACCCAAAGAAAAGAGAAAAGGAGGTGGTTCAACTTCAGAGAGACAGCTTGATGCCAAGACAATGAGACGATTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGTTTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTCTAGTAGAATCAAACTCTCTCAGCTCGAACAAGACCTCCATAGAGCTCGTTCTCAGGGATTGTTTCTAGGTGCTTGCGGTGGCGTAATGGGTGGCAATATCAGCTCTGGAGCTGCAATATTTGACATGGAGTATGCACGGTGGCTAGACGAGGACCACCGTTTGATGGCGGAGCTACGGGCCGCACTACAGGGGCATCTCCCGGATGGCGATCTTCGGGCAATAGTAGACAGTTACATCTCTCACTACGACGAAATATTTCACCTGAAAGGCGTGGCAGCAAAATCGGACGTGTTTCACTTGATCACCGGAATGTGGATGACTCCAGCGGAGCGTTGTTTCCTGTGGATCGGCGGGTTTAGACCATCCAAACTCATAGAGATGCTAGTTCCACAAATAGACACATTAACAGATCAACAAGCACTGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAAGGCCTTGAGCAGTTGCAGCATTCTCTCATTATCACTATCGCCGGCACCGCGGTCGTGGACGGTATCAATCATATGGCTCTTGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACACTTCATCAATTACATCGAATATTGACAGTACGACAGGCAGCTAGATGTTTTGTGGTAATCGGAGAATATTATGGAAGGCTTCGAGCTCTTAGTTCCTTGTGGGTGTCACGACCAAGAGAGAGCAGCTGTTTGAACGATGAAAGTTCATGCCAAACAACAACAGAGCTGCAAATGATTCAGAATTCCCACACCCATTTCCCAAACTTTTGA | 1467 | 44.04 | MANQHSATLPNFHGIIHHNPSLPFINPEGSAFDFGELEEAIVLQGVKLGNDEPKSPNFVTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANINNTLTSKIELEMESESPISRRTCSSNQGLFDQNHHHHLLHLQHLQSEFEDDALRTEPSSQQNQSPPKEKRKGGGSTSERQLDAKTMRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGACGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVDSYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLVPQIDTLTDQQALGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTVRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDESSCQTTTELQMIQNSHTHFPNF* | 489 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10392842 | 10397817 | - | CsaV3_1G014770.1 | Csa01g01468 | 515965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01468 | 488 | MobiDBLite | consensus disorder prediction | 150 | 199 | - | - | |
Csa01g01468 | 488 | SMART | brlzneu | 179 | 245 | IPR004827 | GO:0003700|GO:0006355 | |
Csa01g01468 | 488 | MobiDBLite | consensus disorder prediction | 79 | 99 | - | - | |
Csa01g01468 | 488 | MobiDBLite | consensus disorder prediction | 154 | 169 | - | - | |
Csa01g01468 | 488 | Pfam | bZIP transcription factor | 182 | 223 | IPR004827 | GO:0003700|GO:0006355 | |
Csa01g01468 | 488 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 55 | 466 | - | - | |
Csa01g01468 | 488 | Pfam | Seed dormancy control | 266 | 340 | IPR025422 | GO:0006351|GO:0043565 | |
Csa01g01468 | 488 | MobiDBLite | consensus disorder prediction | 170 | 195 | - | - | |
Csa01g01468 | 488 | Gene3D | - | 182 | 231 | - | - | |
Csa01g01468 | 488 | Coils | Coil | 202 | 229 | - | - | |
Csa01g01468 | 488 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 181 | 225 | IPR004827 | GO:0003700|GO:0006355 | |
Csa01g01468 | 488 | CDD | bZIP_HBP1b-like | 183 | 234 | - | - | |
Csa01g01468 | 488 | ProSiteProfiles | DOG1 domain profile. | 248 | 456 | IPR025422 | GO:0006351|GO:0043565 | |
Csa01g01468 | 488 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 186 | 201 | IPR004827 | GO:0003700|GO:0006355 | |
Csa01g01468 | 488 | SUPERFAMILY | Leucine zipper domain | 183 | 225 | IPR046347 | GO:0003700|GO:0006355 | |
Csa01g01468 | 488 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 55 | 466 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01468 | Csa-Chr1:10392842 | Csa06g01300 | Csa-Chr6:10879380 | 2.00E-129 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30724 | PF14144 | DOG1 | 5.80E-31 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01468 | K14431 | - | csv:101204604 | 967.992 |