Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01542 ATGGACTCTGATGATTTTGAGCAATCCTTGCTTCCTAAGCTATCTGATTCTGATAAGAAGAATTCTCTCCTGAGAAGGAAATCTAACCGACATGGTAGTTTTTCACATTCAGTAGAAAATAACAATCAACCACAAAATTACGATGTAGTGTCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCGACTTATTTGGGAGGAGGCACATTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGAAAGAAAACAAATGGGGTTGTCGATTCCATTTACTTTTGTGTTGTGACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTGATAGCATGGTTGCAAAACTACTTGCATGTGTTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCGGATTACATAGTCGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTGCATGAGGAAAAAGATCAGCTCCAGTGAGATCCTTCAGGAATCTGAGGCTAACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGCTCTTATCGTTGTTGGAATCCTTTTCTTGACTGTGGTTGAGAACCTAGAGTTCACAGATGCCTTTTATTGTGTCTGTTCCACAATCACGACTCTCGGCTATGGGGATCAGAGCTTCTCTACTACAGCCGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCGGTACCATCTGCTTAGCACAGTTTTTTCTGTACCTTGCAGAATTATACACAGAAAGGAGACAAGAATCACTGGTTAATTGGGTTCTCAGCCGAAGCCTCACATATTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTCAGTGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGACACTTTTAAGAAGCTTGACATTGATCAATCAGGATGTCTAACAGAAGCTGATATAGTAGTAATCTCATAG 1029 40.14 MDSDDFEQSLLPKLSDSDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGVVDSIYFCVVTMTTVGYGDLVPDSMVAKLLACVYVFTGMTLGGMILSKAADYIVEKQEILLVKAMCMRKKISSSEILQESEANKLKYKFIMTGILLWALIVVGILFLTVVENLEFTDAFYCVCSTITTLGYGDQSFSTTAGRVFAVIWIMSGTICLAQFFLYLAELYTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILDTFKKLDIDQSGCLTEADIVVIS* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11057256 11061939 - CsaV3_1G015510.1 Csa01g01542 516039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01542 342 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Csa01g01542 342 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa01g01542 342 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa01g01542 342 Gene3D - 57 158 - -
Csa01g01542 342 SUPERFAMILY Voltage-gated potassium channels 176 276 - -
Csa01g01542 342 SUPERFAMILY Voltage-gated potassium channels 58 163 - -
Csa01g01542 342 Gene3D - 159 271 - -
Csa01g01542 342 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 20 338 - -
Csa01g01542 342 MobiDBLite consensus disorder prediction 1 22 - -
Csa01g01542 342 Pfam Ion channel 69 148 IPR013099 -
Csa01g01542 342 Pfam Ion channel 190 261 IPR013099 -
Csa01g01542 342 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 20 338 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa01g01542 342 SUPERFAMILY EF-hand 248 339 IPR011992 -
Csa01g01542 342 Gene3D - 282 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01542 Csa-Chr1:11057256 Csa07g00911 Csa-Chr7:7773569 5.29E-120 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01542 K05389 - csv:101214791 672.544