Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01542 | ATGGACTCTGATGATTTTGAGCAATCCTTGCTTCCTAAGCTATCTGATTCTGATAAGAAGAATTCTCTCCTGAGAAGGAAATCTAACCGACATGGTAGTTTTTCACATTCAGTAGAAAATAACAATCAACCACAAAATTACGATGTAGTGTCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCGACTTATTTGGGAGGAGGCACATTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGAAAGAAAACAAATGGGGTTGTCGATTCCATTTACTTTTGTGTTGTGACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTGATAGCATGGTTGCAAAACTACTTGCATGTGTTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCGGATTACATAGTCGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTGCATGAGGAAAAAGATCAGCTCCAGTGAGATCCTTCAGGAATCTGAGGCTAACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGCTCTTATCGTTGTTGGAATCCTTTTCTTGACTGTGGTTGAGAACCTAGAGTTCACAGATGCCTTTTATTGTGTCTGTTCCACAATCACGACTCTCGGCTATGGGGATCAGAGCTTCTCTACTACAGCCGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCGGTACCATCTGCTTAGCACAGTTTTTTCTGTACCTTGCAGAATTATACACAGAAAGGAGACAAGAATCACTGGTTAATTGGGTTCTCAGCCGAAGCCTCACATATTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTCAGTGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGACACTTTTAAGAAGCTTGACATTGATCAATCAGGATGTCTAACAGAAGCTGATATAGTAGTAATCTCATAG | 1029 | 40.14 | MDSDDFEQSLLPKLSDSDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGVVDSIYFCVVTMTTVGYGDLVPDSMVAKLLACVYVFTGMTLGGMILSKAADYIVEKQEILLVKAMCMRKKISSSEILQESEANKLKYKFIMTGILLWALIVVGILFLTVVENLEFTDAFYCVCSTITTLGYGDQSFSTTAGRVFAVIWIMSGTICLAQFFLYLAELYTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILDTFKKLDIDQSGCLTEADIVVIS* | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11057256 | 11061939 | - | CsaV3_1G015510.1 | Csa01g01542 | 516039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01542 | 342 | ProSitePatterns | EF-hand calcium-binding domain. | 326 | 338 | IPR018247 | - | |
Csa01g01542 | 342 | PRINTS | Two pore domain K+ channel signature | 104 | 132 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Csa01g01542 | 342 | PRINTS | Two pore domain K+ channel signature | 221 | 230 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Csa01g01542 | 342 | Gene3D | - | 57 | 158 | - | - | |
Csa01g01542 | 342 | SUPERFAMILY | Voltage-gated potassium channels | 176 | 276 | - | - | |
Csa01g01542 | 342 | SUPERFAMILY | Voltage-gated potassium channels | 58 | 163 | - | - | |
Csa01g01542 | 342 | Gene3D | - | 159 | 271 | - | - | |
Csa01g01542 | 342 | PANTHER | OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN | 20 | 338 | - | - | |
Csa01g01542 | 342 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Csa01g01542 | 342 | Pfam | Ion channel | 69 | 148 | IPR013099 | - | |
Csa01g01542 | 342 | Pfam | Ion channel | 190 | 261 | IPR013099 | - | |
Csa01g01542 | 342 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 20 | 338 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Csa01g01542 | 342 | SUPERFAMILY | EF-hand | 248 | 339 | IPR011992 | - | |
Csa01g01542 | 342 | Gene3D | - | 282 | 342 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01542 | Csa-Chr1:11057256 | Csa07g00911 | Csa-Chr7:7773569 | 5.29E-120 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01542 | K05389 | - | csv:101214791 | 672.544 |