Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01551 ATGGCCTCAAAGTCGAATTTGAGACCTTCTGCAAAGCAACCTACGGGGATTACCGGCGTTAAAGGGACTGATGTGAGTGTTCTAAAGTCCTTACCTTCACAGACTTCATTAGGAAACAAAATTGGTTCTGTTGTCTCTGGAGATGTATTGAACTACACACAGAAATCCTTGAATCAGTCTACTTTGATTGATTCATCAAATAGCAAATCCTCAAGTTTAAATCATAAAGAGTCTACTGAGTCTTGTAATCAGATAATTAAAGAAAATTCCTCAAAGTCTGACGCTAAGACAGAAGGTCTTAACGGGACTCAGGGCTTAGCGGAGGACTCTATAGATTCCAAGAAGAAAATATCAGAATGTGGGAGTGGGAAGGATAGTTCAGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTATTTCCAAGACGAGTGGAAGTGCAAAAATTAGTGACCGCATTGAGATGGTTGAGAGTGGCAAGAGCAGCATGTGTCGTGGAAGCACAAGCAGCGACATCAGTGACGAAAGTACTTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGACGGGATATTGGGATTAGGTCATTTTAGACTATTGAAAAGACTGGGATGTGGGGATATCGGAAGCGTCTACCTGTCAGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTAGCAAGTCGAAAGAAGTTGCTTCGAGCTCAGACTGAAAGAGAAATATTGCAATCTCTTGATCATCCATTCCTTCCTACATTATATACTCATTTTGAGACTGATAAATTTTCATGCTTAGTGATGGAGTTTTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTACCGAACAGGCAGTGAAATTTTATGTAGCAGAGGTCCTCTTAGCACTCGAGTATCTTCATATGCTTGGGATTGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGGGAAGATGGACATATAATGCTTTCAGACTTCGATCTTTCACTAAGATGTGCAGTTAGTCCAACATTGGTGAAGGGCTCATGTTCCGAGTCTGAACCTTTGAGAAAGAATTCAACTTATTGTGTTCAACCGGCTTGTATTGAACCTTCCTGCATCCAGCCCTCCTGTGTAGTTCCCACGACATGCTTCACTCCCCGACTTTTCTCTAGCAAGTCGAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAATCAGGTAACGCCTTTGCCAGAGCTCATTGCAGAGCCTACCGAGGCGAGGTCAATGTCATTTGTTGGTACACATGAATATTTGGCACCAGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATCTTCCTATATGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAACGTCGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGGGCTACTGAGATCAAACAACATCCTTTCTTTGAAGGTGTTAACTGGGCACTGATACGTTGCGCTTCACCACCAGAAGTACCAAAGCCTGTTGAGATTGAGAGGATACCCTCACCAGCACCTCCAGTCAGTGGAAAAGCTATAATGGCTAGACCTGGCCCCGATTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG 1824 43.59 MASKSNLRPSAKQPTGITGVKGTDVSVLKSLPSQTSLGNKIGSVVSGDVLNYTQKSLNQSTLIDSSNSKSSSLNHKESTESCNQIIKENSSKSDAKTEGLNGTQGLAEDSIDSKKKISECGSGKDSSVSAKVSDGTNSISKTSGSAKISDRIEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFTEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSTYCVQPACIEPSCIQPSCVVPTTCFTPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPVSGKAIMARPGPDSKSSDNYLEFDFF* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11109475 11114320 - CsaV3_1G015600.1 Csa01g01551 516048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01551 607 ProSiteProfiles Protein kinase domain profile. 213 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01551 607 Pfam Protein kinase domain 447 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01551 607 Pfam Protein kinase domain 214 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01551 607 MobiDBLite consensus disorder prediction 62 148 - -
Csa01g01551 607 MobiDBLite consensus disorder prediction 62 108 - -
Csa01g01551 607 Gene3D Phosphorylase Kinase; domain 1 212 296 - -
Csa01g01551 607 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g01551 607 SMART serkin_6 213 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01551 607 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 4 607 - -
Csa01g01551 607 PANTHER FLIPPASE KINASE 1-RELATED 4 607 - -
Csa01g01551 607 CDD STKc_phototropin_like 212 573 - -
Csa01g01551 607 MobiDBLite consensus disorder prediction 122 147 - -
Csa01g01551 607 MobiDBLite consensus disorder prediction 1 23 - -
Csa01g01551 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Csa01g01551 607 Gene3D Transferase(Phosphotransferase) domain 1 297 399 - -
Csa01g01551 607 Gene3D Transferase(Phosphotransferase) domain 1 444 568 - -
Csa01g01551 607 SUPERFAMILY Protein kinase-like (PK-like) 189 578 IPR011009 -
Csa01g01551 607 MobiDBLite consensus disorder prediction 576 599 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01551 Csa06g01287 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01551 Csa-Chr1:11109475 Csa06g02664 Csa-Chr6:23445828 0 dispersed
Csa01g02591 Csa-Chr1:22880655 Csa01g01551 Csa-Chr1:11109475 5.60E-132 transposed
Csa02g00174 Csa-Chr2:1214591 Csa01g01551 Csa-Chr1:11109475 1.87E-144 transposed
Csa03g00720 Csa-Chr3:6442047 Csa01g01551 Csa-Chr1:11109475 0 transposed
Csa03g03977 Csa-Chr3:34781972 Csa01g01551 Csa-Chr1:11109475 0 transposed
Csa04g00768 Csa-Chr4:5296189 Csa01g01551 Csa-Chr1:11109475 4.43E-113 transposed
Csa04g01403 Csa-Chr4:14058083 Csa01g01551 Csa-Chr1:11109475 1.08E-74 transposed
Csa04g02100 Csa-Chr4:21546349 Csa01g01551 Csa-Chr1:11109475 0 transposed
Csa01g01551 Csa-Chr1:11109475 Csa06g03433 Csa-Chr6:28317839 1.27E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77801 PF00069 Pkinase 5.30E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01551 K08286 - csv:101213662 1168.68