Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01566 ATGGATGGGTTAGGGAGAAAAAGAAATCAGTTGCTTGAAGTTACAAAATCTGGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGAATGAATCCATTGGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCTTACTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTCTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTAGGGTTAAAATATTCAACCCCAACTATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTTGCTGTTCTTTTCAGACAAGAATCTGTGGGGATCAAAACAAGTCCAGGTGCAGCTAAGGTGATCGGAACTGTCGTGTGTGTCGGAGGGGCGATGTTGCTGTCGTTTTACCGTGGGCAAACCATTGAGCTTGGTAAATCTGGGATACATTGGAAGTATGCCGAGTTAATGAGGGGGGAAAGTTCAAGCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTTGCTTGGGCGGCTTGGTTTGTTATTCAAGCAAGAGTGAACGAGAAGTTTCCAGCTCCCTACACGAGCACCGCTCTCATGACTTTCATGGCAACCATTCAGTGTGGAGCAATTGCCGTTGGAGTTGAGCATAAGACTCTTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTTGGCGCTCTCTATGCGGGAGTCGCATGCTCTGGGATGGCATTTTGCTTAACCTCTTGGAGTATCCAAAAGAGAGGTCCTCTCTATGCTTCAGTTTTCAGCCCCTTCTTGCTCGTTATTGTGGCTATTTTCAGCTGGGCCTTTTTTCAAGAAAAATTATACGTCGGCACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATTCTGTCCTATGGGGAAAGACCAAAGAAGTGAAACTACAACAACATATTGAAATGACAGCGGCAGCAGAGGCAAAGCTAGATGACTATAATAACAAAGAAGACTTGGAAGAACAGTCCTATGTGGTTTCAAATGCCAATATTCCCCACAAGTAA 1104 44.66 MDGLGRKRNQLLEVTKSGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESVGIKTSPGAAKVIGTVVCVGGAMLLSFYRGQTIELGKSGIHWKYAELMRGESSSNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAVGVEHKTLAAWSLKSSIRLVGALYAGVACSGMAFCLTSWSIQKRGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYSVLWGKTKEVKLQQHIEMTAAAEAKLDDYNNKEDLEEQSYVVSNANIPHK* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11299812 11303060 + CsaV3_1G015750.1 Csa01g01566 516063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01566 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 240 324 - -
Csa01g01566 367 PANTHER WAT1-RELATED PROTEIN 12 337 - -
Csa01g01566 367 Coils Coil 329 349 - -
Csa01g01566 367 Pfam EamA-like transporter family 181 320 IPR000620 GO:0016020|GO:0016021
Csa01g01566 367 Pfam EamA-like transporter family 30 146 IPR000620 GO:0016020|GO:0016021
Csa01g01566 367 PANTHER WAT1-RELATED PROTEIN 12 337 IPR030184 GO:0016021|GO:0022857
Csa01g01566 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 39 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01566 Csa-Chr1:11299812 Csa02g00519 Csa-Chr2:3652692 6.09E-136 dispersed
Csa01g01566 Csa-Chr1:11299812 Csa04g01463 Csa-Chr4:14463477 3.17E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01566 - - csv:101215353 693.73