Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01580 ATGCCAGCCAAAATCCCTTTACGGCTCCGTGGACTACCCACAATAATAATTCTCCTTTTGAGCTTCTCACCACCTTCCTTTGGTGCTCTCGAGGAGGGTTTCTACAAGGGAAAATGTGGCTTTAGAGATGTCGAGTCTATTGTTGGAGGCGTTGTCACTGCCGCACTTAAAAGAGATCGAACTCTCGTTGCTGCTCTTCTGCGTTTACACTTCCACGACTGCTTTGTCTCTGGATGTGACGCTTCCCTCCTCCTAGATGGAAGCAATAGCGAGAAGGATGCCCCTCCGAACTTGACTGTTCGAGGCTATGATCTGATTGATGCAGTGAAGAGTCAATTAGAGAAGACATGTCCGGGTATTGTATCTTGTGCTGATATTATCGCCATGGCTACCAGAGATGCTGTTAATTGGGCTGGAGGAGGACGATACAGGGTCGAAACCGGACGACGAGATGCCTTACAACCAGCCAACATAATTGATCTTCCGGGGCCTTCAATCTGTCAAAGACTCAATTGCAGTCTTCTCCAAAAGAAACCTTACTGTTACAGAGATGGTTTATCTTCTTGA 567 47.09 MPAKIPLRLRGLPTIIILLLSFSPPSFGALEEGFYKGKCGFRDVESIVGGVVTAALKRDRTLVAALLRLHFHDCFVSGCDASLLLDGSNSEKDAPPNLTVRGYDLIDAVKSQLEKTCPGIVSCADIIAMATRDAVNWAGGGRYRVETGRRDALQPANIIDLPGPSICQRLNCSLLQKKPYCYRDGLSS* 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11428627 11429959 - CsaV3_1G015890.1 Csa01g01580 516077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01580 188 Pfam Peroxidase 51 162 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 SUPERFAMILY Heme-dependent peroxidases 30 166 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 PANTHER PEROXIDASE 18 166 - -
Csa01g01580 188 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 ProSiteProfiles Plant heme peroxidase family profile. 29 165 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Csa01g01580 188 PANTHER PEROXIDASE 25-RELATED 18 166 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01580 188 Gene3D - 30 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01580 Csa-Chr1:11428627 Csa04g01970 Csa-Chr4:19698399 4.40E-46 dispersed
Csa01g01488 Csa-Chr1:10618560 Csa01g01580 Csa-Chr1:11428627 1.13E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01580 K00430 - csv:116402906 375.941