Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01580 | ATGCCAGCCAAAATCCCTTTACGGCTCCGTGGACTACCCACAATAATAATTCTCCTTTTGAGCTTCTCACCACCTTCCTTTGGTGCTCTCGAGGAGGGTTTCTACAAGGGAAAATGTGGCTTTAGAGATGTCGAGTCTATTGTTGGAGGCGTTGTCACTGCCGCACTTAAAAGAGATCGAACTCTCGTTGCTGCTCTTCTGCGTTTACACTTCCACGACTGCTTTGTCTCTGGATGTGACGCTTCCCTCCTCCTAGATGGAAGCAATAGCGAGAAGGATGCCCCTCCGAACTTGACTGTTCGAGGCTATGATCTGATTGATGCAGTGAAGAGTCAATTAGAGAAGACATGTCCGGGTATTGTATCTTGTGCTGATATTATCGCCATGGCTACCAGAGATGCTGTTAATTGGGCTGGAGGAGGACGATACAGGGTCGAAACCGGACGACGAGATGCCTTACAACCAGCCAACATAATTGATCTTCCGGGGCCTTCAATCTGTCAAAGACTCAATTGCAGTCTTCTCCAAAAGAAACCTTACTGTTACAGAGATGGTTTATCTTCTTGA | 567 | 47.09 | MPAKIPLRLRGLPTIIILLLSFSPPSFGALEEGFYKGKCGFRDVESIVGGVVTAALKRDRTLVAALLRLHFHDCFVSGCDASLLLDGSNSEKDAPPNLTVRGYDLIDAVKSQLEKTCPGIVSCADIIAMATRDAVNWAGGGRYRVETGRRDALQPANIIDLPGPSICQRLNCSLLQKKPYCYRDGLSS* | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11428627 | 11429959 | - | CsaV3_1G015890.1 | Csa01g01580 | 516077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01580 | 188 | Pfam | Peroxidase | 51 | 162 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | PRINTS | Plant peroxidase signature | 139 | 154 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | PRINTS | Plant peroxidase signature | 120 | 130 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | PRINTS | Plant peroxidase signature | 65 | 85 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | PRINTS | Plant peroxidase signature | 101 | 114 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | PRINTS | Plant peroxidase signature | 41 | 60 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | SUPERFAMILY | Heme-dependent peroxidases | 30 | 166 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | PANTHER | PEROXIDASE | 18 | 166 | - | - | |
Csa01g01580 | 188 | PRINTS | Haem peroxidase superfamily signature | 121 | 138 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | PRINTS | Haem peroxidase superfamily signature | 139 | 151 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | PRINTS | Haem peroxidase superfamily signature | 63 | 77 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | ProSiteProfiles | Plant heme peroxidase family profile. | 29 | 165 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | ProSitePatterns | Peroxidases active site signature. | 63 | 74 | IPR019794 | GO:0004601 | |
Csa01g01580 | 188 | PANTHER | PEROXIDASE 25-RELATED | 18 | 166 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g01580 | 188 | Gene3D | - | 30 | 173 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01580 | Csa-Chr1:11428627 | Csa04g01970 | Csa-Chr4:19698399 | 4.40E-46 | dispersed | |
Csa01g01488 | Csa-Chr1:10618560 | Csa01g01580 | Csa-Chr1:11428627 | 1.13E-119 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01580 | K00430 | - | csv:116402906 | 375.941 |