Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01622 ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGATTCCTCAATTAATGTTTAG 642 42.99 MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDNHDSSINV* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11853581 11854313 + CsaV3_1G017300.1 Csa01g01622 516119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01622 213 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Csa01g01622 213 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 171 - -
Csa01g01622 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa01g01622 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa01g01622 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa01g01622 213 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Csa01g01622 213 Coils Coil 87 114 - -
Csa01g01622 213 PANTHER MADS BOX PROTEIN 2 171 - -
Csa01g01622 213 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Csa01g01622 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Csa01g01622 213 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Csa01g01622 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01622 Csa-Chr1:11853581 Csa01g02690 Csa-Chr1:23890847 2.51E-83 dispersed
Csa01g01622 Csa-Chr1:11853581 Csa07g00595 Csa-Chr7:4326875 3.24E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30731 PF00319 SRF-TF 2.10E-17 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01622 - - csv:101219796 395.201