Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01647 | ATGAGTGGTACTACTGCTATTACTGTTTTAGTTAGAGGTAGGACTATATATGTTGCTAATTCAGGTGATTCGAGGGCAGTCATAGCAGAGCGGAGAGGAAAGGAAGTTGTGGCTGTTGACCTTTCGATTGACCAAACTCCATTTCGAACTGATGAACTCGAACGTGTTAAGCTTTGTGGTGCTAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAATCCTGATATTCAGTGCTGGGGTTCGGAAGAAGGAGATGATGGTGATCCTCCTAGGCTTTGGGTGCCCAATGGGATGTACCCTGGCACTGCTTTTACAAGAAGTATTGGTGACTCAATTGCTGAGACTATTGGAGTCGTTGCTACACCTGAAATTGTTGTTCTGGAGCTGACACAGGATCATCCTTTCTTTGTTGTTGCTAGTGATGGGGTATTCGAGTTTCTTTCAAGCCGAACAGTGGTCGACATGGTTTGTAAATATAAAGATCCCCGTGATGCCTGTGCTGCAATTGTGGCTGAGTCTTACAGACTTTGGCTTCAATTTGAGACTCGAACAGATGATATCACTATTCTTGTGGTGCATATTAATGGGCTAACCAATACGGTTACTAGTGAATCGACAAGATCTGGTGGAGGAGGTTTTGTTCCGTCTGCTATTCCTCAAGTCATGGAAGTGACAGGATCAGAGTCTCCCTCTACATTTGGCTGGAATAGAAACAATCGTGCAAGGCAAGATTTGTCGAGGGCGCGCCTCCGGGCTATCAAAAGTTCTCTAGAAAATGGTCAAGTCTGGGTACCTCCGTCTCCAGCTCACAGGAAGTCATGGGAAGAAGAAGCACATATTGAACGAGCATTGCACGATCATTTCCTATTCAGAAAACTAACTGATTCTCAATGCCAAGTTTTATTGGATTGCATGCAAAGAGTTGAGGTCATCCCCGGGCAAATTGTAGTCGAACAAGGTGGCGAAGGTGACTGTTTTTACGTGGTTGGTAGTGGAGAATTTGAAGTCTTGGCAACCCAGGAAGAAAGCCACGGAGAGGTCCCTAGGGTTTTACAACACTACACAGCGGAGAAGCTCTCTTCCTTTGGCGAATTGGCTTTGATGTATAACAAACCACTTCAAGCCTCTGTGCGTGCAGTGACAAGTGGGACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATATCAGAATTTTCTAACTTGTCATCTTTGAAATTGCTTCGATCTGTGGACCTCTTGTCGAAGTTAACAATCTTGCAATTGAGTCACATTGCAGACTGCCTTTCTGAAGTTCAATTCTCAGATGGGGAGCTGATTGTTGATGGGACTGAAGGCTCGTGTGCACTGCACATTATTCAGAAGGGGCAAGTGAGGATTACTTTTGATGCAGAGTTAATGAGCAATTCAAATGTTTACAGCTTCAATTATGTCAGTCAAAAAGAGGACGGTGCTGCACAGAGTGGTAGCGAGATTTCAGCTATTAGGAAAGAGGGAAGTTATTTTGGCGAGTGGGCACTTCTTGGTGAGCATATTGGCTTCTTACGTGCAGTTGCTGTGGGAGATGTTGTGTGTGCTATTTTAACAAAGGAAAAGTTTGAATCAGTTGTTGGCCCCATACCAAAGCTCTCTCAAGATGATCAAAAGGCAACAGAACACTCTTTAAACTCTCTCCATCGGTCTGCCAAAATTATTGATATTTCAGCTCTTTCTAAAGTTGGGCTCTCCGATCTCGAGTGGAAAATGTGTTTATATTCCACGGAATACAGTGAAATTGGGCTAGTTCGGTTAAGGAACACAGAAACTATGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAACGGCTGGGACTTGAAGCACAAGTTTTGAAGGAGAAAAATCTTATGAAGACCATTAGTTCTTCAGCTTGTGTGCCGGAACTTCTCTGCACTTGTTTTGATCCATCACATGCTGGCATACTGCTAAAGACATGCCTGGCTTGCCCTTTGTCTTCGATACTTCACGTCCCACTAGATGAATTTTCTGCACGTTTCTTTGCAGCCTCTCTTATTATGGCACTGGAGGATTTGCACAAGCTTGGTGTTCTCCACAGAGGAATTTCCCCTGATGTTCTAATGTTGGATCAAACCGGACACATACAGTTGGTAGACTTCAGATTTGGGAAAAAAACTTTGGGTGAGAGAACATTTACTATTTGCGGGACAGCCGACTTTTTAGCACCTGAGATAGTTCAAGGCAATGGTCATGGCTTTGCTGCTGACTGGTGGGCACTGGGAGTTTTAATCCATTTCATGCTGAAATGTGAAATGCCATTTGGATCGTGGCGACAAAGCGAGCTTGATACTTTTTCGAAGATTGCAAAAGGTCAACTAAGTCTTCCCCAGATTTTCAGTCCTGAAGCAATCGATCTCATCACCAAGTTACTTGAAGTCGATGAGAAGAAAAGACTTGGAAACGAGAACCAAAACTCTGTTAGAAGTCATCCATGGTTTGATGGCGTTGATTGGAAGGGGATCCATGAGGGTACCTTTCCCGTTCCTGAAACAATAACTTCTCGTGTAGCTCAATATTTGGAGAGCTACTCTGAAAATTGCAGTGTTTCTTTAACTAAACCACCTCAAGATCTTGAAGAACAGGAAGTCCCTGAGTGGATCAACGACTGGTAG | 2679 | 43.67 | MSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDIQCWGSEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVLELTQDHPFFVVASDGVFEFLSSRTVVDMVCKYKDPRDACAAIVAESYRLWLQFETRTDDITILVVHINGLTNTVTSESTRSGGGGFVPSAIPQVMEVTGSESPSTFGWNRNNRARQDLSRARLRAIKSSLENGQVWVPPSPAHRKSWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRVLQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVDLLSKLTILQLSHIADCLSEVQFSDGELIVDGTEGSCALHIIQKGQVRITFDAELMSNSNVYSFNYVSQKEDGAAQSGSEISAIRKEGSYFGEWALLGEHIGFLRAVAVGDVVCAILTKEKFESVVGPIPKLSQDDQKATEHSLNSLHRSAKIIDISALSKVGLSDLEWKMCLYSTEYSEIGLVRLRNTETMLSLKRFTRQKVKRLGLEAQVLKEKNLMKTISSSACVPELLCTCFDPSHAGILLKTCLACPLSSILHVPLDEFSARFFAASLIMALEDLHKLGVLHRGISPDVLMLDQTGHIQLVDFRFGKKTLGERTFTICGTADFLAPEIVQGNGHGFAADWWALGVLIHFMLKCEMPFGSWRQSELDTFSKIAKGQLSLPQIFSPEAIDLITKLLEVDEKKRLGNENQNSVRSHPWFDGVDWKGIHEGTFPVPETITSRVAQYLESYSENCSVSLTKPPQDLEEQEVPEWINDW* | 893 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12225796 | 12230200 | - | CsaV3_1G019530.1 | Csa01g01647 | 516144 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01647 | 892 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 195 | IPR001932 | - | |
Csa01g01647 | 892 | Gene3D | Phosphorylase Kinase; domain 1 | 580 | 665 | - | - | |
Csa01g01647 | 892 | Gene3D | Jelly Rolls | 259 | 398 | IPR014710 | - | |
Csa01g01647 | 892 | SMART | serkin_6 | 588 | 835 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g01647 | 892 | Pfam | Cyclic nucleotide-binding domain | 310 | 398 | IPR000595 | - | |
Csa01g01647 | 892 | SUPERFAMILY | cAMP-binding domain-like | 271 | 399 | IPR018490 | - | |
Csa01g01647 | 892 | CDD | CAP_ED | 416 | 548 | IPR000595 | - | |
Csa01g01647 | 892 | CDD | CAP_ED | 290 | 398 | IPR000595 | - | |
Csa01g01647 | 892 | CDD | PP2Cc | 2 | 195 | IPR001932 | - | |
Csa01g01647 | 892 | SMART | cnmp_10 | 290 | 413 | IPR000595 | - | |
Csa01g01647 | 892 | SMART | cnmp_10 | 416 | 555 | IPR000595 | - | |
Csa01g01647 | 892 | Gene3D | Jelly Rolls | 403 | 560 | IPR014710 | - | |
Csa01g01647 | 892 | SMART | PP2C_4 | 1 | 193 | IPR001932 | - | |
Csa01g01647 | 892 | SUPERFAMILY | PP2C-like | 2 | 197 | IPR036457 | - | |
Csa01g01647 | 892 | Gene3D | Transferase(Phosphotransferase) domain 1 | 666 | 850 | - | - | |
Csa01g01647 | 892 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 290 | 398 | IPR000595 | - | |
Csa01g01647 | 892 | ProSiteProfiles | Protein kinase domain profile. | 581 | 835 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g01647 | 892 | SUPERFAMILY | cAMP-binding domain-like | 409 | 548 | IPR018490 | - | |
Csa01g01647 | 892 | PANTHER | PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN | 1 | 892 | - | - | |
Csa01g01647 | 892 | Pfam | Protein phosphatase 2C | 2 | 173 | IPR001932 | - | |
Csa01g01647 | 892 | Pfam | Protein kinase domain | 592 | 835 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g01647 | 892 | PANTHER | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 1 | 892 | - | - | |
Csa01g01647 | 892 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 416 | 542 | IPR000595 | - | |
Csa01g01647 | 892 | Gene3D | - | 1 | 196 | IPR036457 | - | |
Csa01g01647 | 892 | PRINTS | cAMP-dependent protein kinase signature | 536 | 548 | - | - | |
Csa01g01647 | 892 | PRINTS | cAMP-dependent protein kinase signature | 311 | 325 | - | - | |
Csa01g01647 | 892 | PRINTS | cAMP-dependent protein kinase signature | 361 | 370 | - | - | |
Csa01g01647 | 892 | PRINTS | cAMP-dependent protein kinase signature | 326 | 340 | - | - | |
Csa01g01647 | 892 | SUPERFAMILY | Protein kinase-like (PK-like) | 572 | 867 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01647 | Csa-Chr1:12225796 | Csa03g01389 | Csa-Chr3:10409924 | 5.28E-92 | dispersed | |
Csa06g01632 | Csa-Chr6:14302753 | Csa01g01647 | Csa-Chr1:12225796 | 0 | transposed | |
Csa01g01647 | Csa-Chr1:12225796 | Csa06g00552 | Csa-Chr6:4746163 | 1.42E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77802 | PF00069 | Pkinase | 2.20E-34 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01647 | - | - | csv:105436308 | 1776.14 |