Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01647 ATGAGTGGTACTACTGCTATTACTGTTTTAGTTAGAGGTAGGACTATATATGTTGCTAATTCAGGTGATTCGAGGGCAGTCATAGCAGAGCGGAGAGGAAAGGAAGTTGTGGCTGTTGACCTTTCGATTGACCAAACTCCATTTCGAACTGATGAACTCGAACGTGTTAAGCTTTGTGGTGCTAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAATCCTGATATTCAGTGCTGGGGTTCGGAAGAAGGAGATGATGGTGATCCTCCTAGGCTTTGGGTGCCCAATGGGATGTACCCTGGCACTGCTTTTACAAGAAGTATTGGTGACTCAATTGCTGAGACTATTGGAGTCGTTGCTACACCTGAAATTGTTGTTCTGGAGCTGACACAGGATCATCCTTTCTTTGTTGTTGCTAGTGATGGGGTATTCGAGTTTCTTTCAAGCCGAACAGTGGTCGACATGGTTTGTAAATATAAAGATCCCCGTGATGCCTGTGCTGCAATTGTGGCTGAGTCTTACAGACTTTGGCTTCAATTTGAGACTCGAACAGATGATATCACTATTCTTGTGGTGCATATTAATGGGCTAACCAATACGGTTACTAGTGAATCGACAAGATCTGGTGGAGGAGGTTTTGTTCCGTCTGCTATTCCTCAAGTCATGGAAGTGACAGGATCAGAGTCTCCCTCTACATTTGGCTGGAATAGAAACAATCGTGCAAGGCAAGATTTGTCGAGGGCGCGCCTCCGGGCTATCAAAAGTTCTCTAGAAAATGGTCAAGTCTGGGTACCTCCGTCTCCAGCTCACAGGAAGTCATGGGAAGAAGAAGCACATATTGAACGAGCATTGCACGATCATTTCCTATTCAGAAAACTAACTGATTCTCAATGCCAAGTTTTATTGGATTGCATGCAAAGAGTTGAGGTCATCCCCGGGCAAATTGTAGTCGAACAAGGTGGCGAAGGTGACTGTTTTTACGTGGTTGGTAGTGGAGAATTTGAAGTCTTGGCAACCCAGGAAGAAAGCCACGGAGAGGTCCCTAGGGTTTTACAACACTACACAGCGGAGAAGCTCTCTTCCTTTGGCGAATTGGCTTTGATGTATAACAAACCACTTCAAGCCTCTGTGCGTGCAGTGACAAGTGGGACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATATCAGAATTTTCTAACTTGTCATCTTTGAAATTGCTTCGATCTGTGGACCTCTTGTCGAAGTTAACAATCTTGCAATTGAGTCACATTGCAGACTGCCTTTCTGAAGTTCAATTCTCAGATGGGGAGCTGATTGTTGATGGGACTGAAGGCTCGTGTGCACTGCACATTATTCAGAAGGGGCAAGTGAGGATTACTTTTGATGCAGAGTTAATGAGCAATTCAAATGTTTACAGCTTCAATTATGTCAGTCAAAAAGAGGACGGTGCTGCACAGAGTGGTAGCGAGATTTCAGCTATTAGGAAAGAGGGAAGTTATTTTGGCGAGTGGGCACTTCTTGGTGAGCATATTGGCTTCTTACGTGCAGTTGCTGTGGGAGATGTTGTGTGTGCTATTTTAACAAAGGAAAAGTTTGAATCAGTTGTTGGCCCCATACCAAAGCTCTCTCAAGATGATCAAAAGGCAACAGAACACTCTTTAAACTCTCTCCATCGGTCTGCCAAAATTATTGATATTTCAGCTCTTTCTAAAGTTGGGCTCTCCGATCTCGAGTGGAAAATGTGTTTATATTCCACGGAATACAGTGAAATTGGGCTAGTTCGGTTAAGGAACACAGAAACTATGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAACGGCTGGGACTTGAAGCACAAGTTTTGAAGGAGAAAAATCTTATGAAGACCATTAGTTCTTCAGCTTGTGTGCCGGAACTTCTCTGCACTTGTTTTGATCCATCACATGCTGGCATACTGCTAAAGACATGCCTGGCTTGCCCTTTGTCTTCGATACTTCACGTCCCACTAGATGAATTTTCTGCACGTTTCTTTGCAGCCTCTCTTATTATGGCACTGGAGGATTTGCACAAGCTTGGTGTTCTCCACAGAGGAATTTCCCCTGATGTTCTAATGTTGGATCAAACCGGACACATACAGTTGGTAGACTTCAGATTTGGGAAAAAAACTTTGGGTGAGAGAACATTTACTATTTGCGGGACAGCCGACTTTTTAGCACCTGAGATAGTTCAAGGCAATGGTCATGGCTTTGCTGCTGACTGGTGGGCACTGGGAGTTTTAATCCATTTCATGCTGAAATGTGAAATGCCATTTGGATCGTGGCGACAAAGCGAGCTTGATACTTTTTCGAAGATTGCAAAAGGTCAACTAAGTCTTCCCCAGATTTTCAGTCCTGAAGCAATCGATCTCATCACCAAGTTACTTGAAGTCGATGAGAAGAAAAGACTTGGAAACGAGAACCAAAACTCTGTTAGAAGTCATCCATGGTTTGATGGCGTTGATTGGAAGGGGATCCATGAGGGTACCTTTCCCGTTCCTGAAACAATAACTTCTCGTGTAGCTCAATATTTGGAGAGCTACTCTGAAAATTGCAGTGTTTCTTTAACTAAACCACCTCAAGATCTTGAAGAACAGGAAGTCCCTGAGTGGATCAACGACTGGTAG 2679 43.67 MSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDIQCWGSEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVLELTQDHPFFVVASDGVFEFLSSRTVVDMVCKYKDPRDACAAIVAESYRLWLQFETRTDDITILVVHINGLTNTVTSESTRSGGGGFVPSAIPQVMEVTGSESPSTFGWNRNNRARQDLSRARLRAIKSSLENGQVWVPPSPAHRKSWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRVLQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVDLLSKLTILQLSHIADCLSEVQFSDGELIVDGTEGSCALHIIQKGQVRITFDAELMSNSNVYSFNYVSQKEDGAAQSGSEISAIRKEGSYFGEWALLGEHIGFLRAVAVGDVVCAILTKEKFESVVGPIPKLSQDDQKATEHSLNSLHRSAKIIDISALSKVGLSDLEWKMCLYSTEYSEIGLVRLRNTETMLSLKRFTRQKVKRLGLEAQVLKEKNLMKTISSSACVPELLCTCFDPSHAGILLKTCLACPLSSILHVPLDEFSARFFAASLIMALEDLHKLGVLHRGISPDVLMLDQTGHIQLVDFRFGKKTLGERTFTICGTADFLAPEIVQGNGHGFAADWWALGVLIHFMLKCEMPFGSWRQSELDTFSKIAKGQLSLPQIFSPEAIDLITKLLEVDEKKRLGNENQNSVRSHPWFDGVDWKGIHEGTFPVPETITSRVAQYLESYSENCSVSLTKPPQDLEEQEVPEWINDW* 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12225796 12230200 - CsaV3_1G019530.1 Csa01g01647 516144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01647 892 ProSiteProfiles PPM-type phosphatase domain profile. 1 195 IPR001932 -
Csa01g01647 892 Gene3D Phosphorylase Kinase; domain 1 580 665 - -
Csa01g01647 892 Gene3D Jelly Rolls 259 398 IPR014710 -
Csa01g01647 892 SMART serkin_6 588 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01647 892 Pfam Cyclic nucleotide-binding domain 310 398 IPR000595 -
Csa01g01647 892 SUPERFAMILY cAMP-binding domain-like 271 399 IPR018490 -
Csa01g01647 892 CDD CAP_ED 416 548 IPR000595 -
Csa01g01647 892 CDD CAP_ED 290 398 IPR000595 -
Csa01g01647 892 CDD PP2Cc 2 195 IPR001932 -
Csa01g01647 892 SMART cnmp_10 290 413 IPR000595 -
Csa01g01647 892 SMART cnmp_10 416 555 IPR000595 -
Csa01g01647 892 Gene3D Jelly Rolls 403 560 IPR014710 -
Csa01g01647 892 SMART PP2C_4 1 193 IPR001932 -
Csa01g01647 892 SUPERFAMILY PP2C-like 2 197 IPR036457 -
Csa01g01647 892 Gene3D Transferase(Phosphotransferase) domain 1 666 850 - -
Csa01g01647 892 ProSiteProfiles cAMP/cGMP binding motif profile. 290 398 IPR000595 -
Csa01g01647 892 ProSiteProfiles Protein kinase domain profile. 581 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01647 892 SUPERFAMILY cAMP-binding domain-like 409 548 IPR018490 -
Csa01g01647 892 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 1 892 - -
Csa01g01647 892 Pfam Protein phosphatase 2C 2 173 IPR001932 -
Csa01g01647 892 Pfam Protein kinase domain 592 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01647 892 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 1 892 - -
Csa01g01647 892 ProSiteProfiles cAMP/cGMP binding motif profile. 416 542 IPR000595 -
Csa01g01647 892 Gene3D - 1 196 IPR036457 -
Csa01g01647 892 PRINTS cAMP-dependent protein kinase signature 536 548 - -
Csa01g01647 892 PRINTS cAMP-dependent protein kinase signature 311 325 - -
Csa01g01647 892 PRINTS cAMP-dependent protein kinase signature 361 370 - -
Csa01g01647 892 PRINTS cAMP-dependent protein kinase signature 326 340 - -
Csa01g01647 892 SUPERFAMILY Protein kinase-like (PK-like) 572 867 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01647 Csa-Chr1:12225796 Csa03g01389 Csa-Chr3:10409924 5.28E-92 dispersed
Csa06g01632 Csa-Chr6:14302753 Csa01g01647 Csa-Chr1:12225796 0 transposed
Csa01g01647 Csa-Chr1:12225796 Csa06g00552 Csa-Chr6:4746163 1.42E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77802 PF00069 Pkinase 2.20E-34 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01647 - - csv:105436308 1776.14