Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01655 ATGGCTGCAACTTCTGGTGCTGTGCTTACTGGATTGGGCTCACCCTTCCTCCGTGGAAGTAGCAGAACTCGGACCTTGCTGGCCGGAGCTAGAGGTAGTGTCAATGTTGTCAGCTCTAGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCTAAGAAGTCTTGGCTCCCTGGTGTTAGAGGTGGTGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCACTTCCAGGTGACTACGGCTTCGACCCATTGGGTTTGGGGAAGGACCCTGCATTTTTGAAGTGGTATAGAGAAGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTCGGACAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTTCTAGGAACCCAGCTTCTGCTAATGGGATGGTTGAAAGCAAACGATGGGTGGATTTCTTCAACCAGAATCTCAATCGGTGGAATGGGCTACACCATGGTCGAGGACGGCAGAGAATTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTCTTAA 618 53.07 MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWLKANDGWISSTRISIGGMGYTMVEDGREFRKRNRRTRVSRRKILRSIGICRNS* 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12361847 12362915 + CsaV3_1G019610.1 Csa01g01655 516152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01655 205 SUPERFAMILY Chlorophyll a-b binding protein 64 155 - -
Csa01g01655 205 Gene3D Chlorophyll a/b binding protein domain 67 193 - -
Csa01g01655 205 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 156 IPR001344 GO:0009765|GO:0016020
Csa01g01655 205 Pfam Chlorophyll A-B binding protein 67 156 IPR022796 -
Csa01g01655 205 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01655 Csa-Chr1:12361847 Csa01g03007 Csa-Chr1:26223514 3.35E-23 dispersed
Csa01g01655 Csa-Chr1:12361847 Csa06g00534 Csa-Chr6:4530953 2.95E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01655 K08917 - csv:101204705 299.671