Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01689 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATTTGGTGGTGAATTAATGGAAGCAATTGAACCTTTTATGAAAGTTGCTTCCCCTTCTTATTTTCCTTCTTCTTTTCCGGACTTCTCTTTCTCTTCTTCTTCTTCATCTTCTTCTTCTTCTATCCCAACAGAGTCTACTTCTTACCCTTCTGATTGCTCTCCTCCGTTGACCCATTTATTTTCCGATGGGTTCTCGGGTCAAGATTTCCATGGCGTAGAGCAATCACCTTCTATTGGACTTAATTACTTAACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCACACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAGGTAGTAAGAAATCAGAGCAACACCGCCGGAAATCTGCTTGGACCGAGGGGGATTCCAATGAAACACGTGGGATCTCCACCGAAATCGACGAAACTATATCGAGGCGTGAGGCAAAGGCATTGGGGGAAATGGGTGGCTGAGATCCGTCTTCCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCTTACGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCATGGCTCCTCCGTCGGTGGCGATTTCGGCGAGTACAAACCGCTACACTCCGCCGTCGACGCTAAACTCGAAGCCATCTGCCAAACCTTGGCCGAGTCGCAGACAAAGGGGAAATCGGATCGGAGAAAGTCGAAGTCATCTGGTTCTTCAACCATCGCATCGGGATCTCAGGCCCCAACGGTGATCGATTCCGACGACGATCTAAAACCGGCGGATGCTGGATCAAGTGGGTCGGAGGTCTGTTGCAAGGCGGAGAACTCCTCGTCACCGGTTTCGGCGGAGAGCGACGAGTCAGGAGGGTCTTCGCCGTTATCAGATCTGACGTTCCAGGATTCGACGGATTCGGCATGGGAACAAACTACAGAAAGCTGTTTGTTGCAGAAATATCCATCGGAAATCGATTGGGCTTCGATATTCACAAATTGA 1089 49.77 MAALMDLYGCREFQSDPFGGELMEAIEPFMKVASPSYFPSSFPDFSFSSSSSSSSSSIPTESTSYPSDCSPPLTHLFSDGFSGQDFHGVEQSPSIGLNYLTPFQIQQIQSQFGLHTQIQPVWGQINNQVVRNQSNTAGNLLGPRGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQTKGKSDRRKSKSSGSSTIASGSQAPTVIDSDDDLKPADAGSSGSEVCCKAENSSSPVSAESDESGGSSPLSDLTFQDSTDSAWEQTTESCLLQKYPSEIDWASIFTN* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13278059 13279147 - CsaV3_1G022920.1 Csa01g01689 516186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01689 362 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Csa01g01689 362 MobiDBLite consensus disorder prediction 267 282 - -
Csa01g01689 362 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Csa01g01689 362 MobiDBLite consensus disorder prediction 254 337 - -
Csa01g01689 362 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Csa01g01689 362 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Csa01g01689 362 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Csa01g01689 362 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Csa01g01689 362 MobiDBLite consensus disorder prediction 301 337 - -
Csa01g01689 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 359 - -
Csa01g01689 362 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Csa01g01689 362 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Csa01g01689 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01689 Csa-Chr1:13278059 Csa04g01841 Csa-Chr4:18031783 1.43E-107 dispersed
Csa06g00201 Csa-Chr6:1371453 Csa01g01689 Csa-Chr1:13278059 1.29E-24 dispersed
Csa01g01689 Csa-Chr1:13278059 Csa07g00434 Csa-Chr7:3130847 1.17E-32 transposed
Csa01g01689 Csa-Chr1:13278059 Csa06g01107 Csa-Chr6:9141584 1.56E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30734 PF00847 AP2 4.80E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01689 K09286 - csv:101222833 652.129