Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01689 | ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATTTGGTGGTGAATTAATGGAAGCAATTGAACCTTTTATGAAAGTTGCTTCCCCTTCTTATTTTCCTTCTTCTTTTCCGGACTTCTCTTTCTCTTCTTCTTCTTCATCTTCTTCTTCTTCTATCCCAACAGAGTCTACTTCTTACCCTTCTGATTGCTCTCCTCCGTTGACCCATTTATTTTCCGATGGGTTCTCGGGTCAAGATTTCCATGGCGTAGAGCAATCACCTTCTATTGGACTTAATTACTTAACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCACACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAGGTAGTAAGAAATCAGAGCAACACCGCCGGAAATCTGCTTGGACCGAGGGGGATTCCAATGAAACACGTGGGATCTCCACCGAAATCGACGAAACTATATCGAGGCGTGAGGCAAAGGCATTGGGGGAAATGGGTGGCTGAGATCCGTCTTCCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCTTACGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCATGGCTCCTCCGTCGGTGGCGATTTCGGCGAGTACAAACCGCTACACTCCGCCGTCGACGCTAAACTCGAAGCCATCTGCCAAACCTTGGCCGAGTCGCAGACAAAGGGGAAATCGGATCGGAGAAAGTCGAAGTCATCTGGTTCTTCAACCATCGCATCGGGATCTCAGGCCCCAACGGTGATCGATTCCGACGACGATCTAAAACCGGCGGATGCTGGATCAAGTGGGTCGGAGGTCTGTTGCAAGGCGGAGAACTCCTCGTCACCGGTTTCGGCGGAGAGCGACGAGTCAGGAGGGTCTTCGCCGTTATCAGATCTGACGTTCCAGGATTCGACGGATTCGGCATGGGAACAAACTACAGAAAGCTGTTTGTTGCAGAAATATCCATCGGAAATCGATTGGGCTTCGATATTCACAAATTGA | 1089 | 49.77 | MAALMDLYGCREFQSDPFGGELMEAIEPFMKVASPSYFPSSFPDFSFSSSSSSSSSSIPTESTSYPSDCSPPLTHLFSDGFSGQDFHGVEQSPSIGLNYLTPFQIQQIQSQFGLHTQIQPVWGQINNQVVRNQSNTAGNLLGPRGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQTKGKSDRRKSKSSGSSTIASGSQAPTVIDSDDDLKPADAGSSGSEVCCKAENSSSPVSAESDESGGSSPLSDLTFQDSTDSAWEQTTESCLLQKYPSEIDWASIFTN* | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13278059 | 13279147 | - | CsaV3_1G022920.1 | Csa01g01689 | 516186 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01689 | 362 | Pfam | AP2 domain | 161 | 209 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g01689 | 362 | MobiDBLite | consensus disorder prediction | 267 | 282 | - | - | |
Csa01g01689 | 362 | CDD | AP2 | 159 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g01689 | 362 | MobiDBLite | consensus disorder prediction | 254 | 337 | - | - | |
Csa01g01689 | 362 | Gene3D | AP2/ERF domain | 160 | 218 | IPR036955 | GO:0003700|GO:0006355 | |
Csa01g01689 | 362 | PRINTS | Ethylene responsive element binding protein signature | 161 | 172 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g01689 | 362 | PRINTS | Ethylene responsive element binding protein signature | 183 | 199 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g01689 | 362 | SMART | rav1_2 | 160 | 223 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g01689 | 362 | MobiDBLite | consensus disorder prediction | 301 | 337 | - | - | |
Csa01g01689 | 362 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 4 | 359 | - | - | |
Csa01g01689 | 362 | SUPERFAMILY | DNA-binding domain | 160 | 218 | IPR016177 | GO:0003677 | |
Csa01g01689 | 362 | ProSiteProfiles | AP2/ERF domain profile. | 160 | 217 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g01689 | 362 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 | 4 | 359 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01689 | Csa-Chr1:13278059 | Csa04g01841 | Csa-Chr4:18031783 | 1.43E-107 | dispersed | |
Csa06g00201 | Csa-Chr6:1371453 | Csa01g01689 | Csa-Chr1:13278059 | 1.29E-24 | dispersed | |
Csa01g01689 | Csa-Chr1:13278059 | Csa07g00434 | Csa-Chr7:3130847 | 1.17E-32 | transposed | |
Csa01g01689 | Csa-Chr1:13278059 | Csa06g01107 | Csa-Chr6:9141584 | 1.56E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30734 | PF00847 | AP2 | 4.80E-15 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01689 | K09286 | - | csv:101222833 | 652.129 |