Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01698 | ATGGCGTTGCAGAATATTGGTGCCTCAAACCGCGATGATGCCTTCTATAGGTATAAAATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGCAATGGCATCAAGACTAATGTAGTTAACATGGTGGAAATTGCAAAGGCCTTGGGCAGACCTGCCTCTTACACTACCAAGTACTTTGGATGTGAACTTGGTGCACAATCCAAGTTCGATGAGAAAACTGGAACTTCTCTTGTAAATGGTGCACACGAGACAGCAAAGCTGGCTGGTCTTCTTGAAAACTTCATCAAGAAATATGTTCAATGCTATGGATGTGGTAACCCTGAGACTGAGATAATCATCACGAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCTGATGTTGACATGAGAGATAAACTCACAACATTTATTCTCAAGAACCCACCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGGCTTAAGGAGGGAGAGGCTGCCGATGAGGAGCAGAAGAAAATAAAAAAGGATGTTCTAAAAAAGAAAAGCACTACTACAAAGGATGCTGTAACCAAAGTTCCAAGCAAGAAAAAGAATAATGGCTCAGATGAAGATCATTCTCCAACTCGTAGCCATGCTGATGATAATGACCGAGCAGCTGATGACGAAGATGATGATGACGTGCAGTGGCAAACGGATACTTCTTTAGAGGCAGCCAAGCAGCGTATTCAGGAGCAGTTGAGTGCTGTCACTGCAGATATGGTCATGCTCTCAACTACTGAAGAGAACAAGTCGTCAAAGAAGTCATCTGAGCATGAGAAGTCTGCAGCCAATGGTAACAAGAATGGAAATGGAGTTTCTACACATGGTGCCCTCATTCAAGAAATCAAAGATTATTTGAAGAAAGGTGCATCCACAACCGATCTCAAATCATTCTTGGAATCACTCGCTGGAACTCGCCAAGAGATTGTGAACGCCTTAGTCGAAGCTCTATTTGATGGTGTTGGCAAAGGCTTCTCTAAGGAAGTAGTGAAGAAGAAGAAGTTCCTGGCTGTAGTTGCTGCTGTGGAAGGATCACAGATAATTCTTTTACGTGCCATTGAATCTTTCTGTCTCAACACAAGTCCAGAGGCGGGTAAGGAGGTTGCCCTTGTCCTGAAATCACTATACGATGGCGATGTAATAGAGGAGGAATTCGTACTAGAGTGGTACCAGCAGGGTGTGGCTGGTGCAAACAAAAGCTCTCAAATCTGGAAATACGTAAAGCCATTCATCGAATGGCTCCAAAATGCTGAGTCGGAGACGGAAGAAGAGTAA | 1335 | 43.52 | MALQNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKIKKDVLKKKSTTTKDAVTKVPSKKKNNGSDEDHSPTRSHADDNDRAADDEDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTTEENKSSKKSSEHEKSAANGNKNGNGVSTHGALIQEIKDYLKKGASTTDLKSFLESLAGTRQEIVNALVEALFDGVGKGFSKEVVKKKKFLAVVAAVEGSQIILLRAIESFCLNTSPEAGKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE* | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13371939 | 13373273 | + | CsaV3_1G023010.1 | Csa01g01698 | 516195 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01698 | 444 | CDD | W2_eIF5 | 293 | 442 | - | - | |
Csa01g01698 | 444 | MobiDBLite | consensus disorder prediction | 148 | 223 | - | - | |
Csa01g01698 | 444 | Gene3D | - | 2 | 104 | - | - | |
Csa01g01698 | 444 | Gene3D | - | 292 | 444 | - | - | |
Csa01g01698 | 444 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 1 | 444 | IPR045196 | GO:0003743|GO:0006413 | |
Csa01g01698 | 444 | Coils | Coil | 431 | 444 | - | - | |
Csa01g01698 | 444 | SMART | eIF2Bneu4 | 15 | 129 | IPR002735 | GO:0003743|GO:0006413 | |
Csa01g01698 | 444 | MobiDBLite | consensus disorder prediction | 143 | 235 | - | - | |
Csa01g01698 | 444 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 98 | 133 | IPR016190 | GO:0003743|GO:0006413 | |
Csa01g01698 | 444 | Coils | Coil | 159 | 179 | - | - | |
Csa01g01698 | 444 | Pfam | Domain found in IF2B/IF5 | 11 | 127 | IPR002735 | GO:0003743|GO:0006413 | |
Csa01g01698 | 444 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED | 1 | 444 | - | - | |
Csa01g01698 | 444 | SUPERFAMILY | ARM repeat | 298 | 438 | IPR016024 | - | |
Csa01g01698 | 444 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 10 | 101 | IPR016189 | GO:0003743|GO:0006413 | |
Csa01g01698 | 444 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 366 | 444 | IPR003307 | GO:0005515 | |
Csa01g01698 | 444 | Gene3D | - | 105 | 145 | - | - | |
Csa01g01698 | 444 | ProSiteProfiles | W2 domain profile. | 288 | 444 | IPR003307 | GO:0005515 | |
Csa01g01698 | 444 | MobiDBLite | consensus disorder prediction | 266 | 293 | - | - | |
Csa01g01698 | 444 | SMART | 542_3 | 353 | 440 | IPR003307 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01437 | Csa-Chr1:9975186 | Csa01g01698 | Csa-Chr1:13371939 | 2.54E-08 | dispersed | |
Csa02g00833 | Csa-Chr2:7549108 | Csa01g01698 | Csa-Chr1:13371939 | 7.17E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01698 | K03262 | - | csv:101210873 | 768.459 |