Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01698 ATGGCGTTGCAGAATATTGGTGCCTCAAACCGCGATGATGCCTTCTATAGGTATAAAATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGCAATGGCATCAAGACTAATGTAGTTAACATGGTGGAAATTGCAAAGGCCTTGGGCAGACCTGCCTCTTACACTACCAAGTACTTTGGATGTGAACTTGGTGCACAATCCAAGTTCGATGAGAAAACTGGAACTTCTCTTGTAAATGGTGCACACGAGACAGCAAAGCTGGCTGGTCTTCTTGAAAACTTCATCAAGAAATATGTTCAATGCTATGGATGTGGTAACCCTGAGACTGAGATAATCATCACGAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCTGATGTTGACATGAGAGATAAACTCACAACATTTATTCTCAAGAACCCACCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGGCTTAAGGAGGGAGAGGCTGCCGATGAGGAGCAGAAGAAAATAAAAAAGGATGTTCTAAAAAAGAAAAGCACTACTACAAAGGATGCTGTAACCAAAGTTCCAAGCAAGAAAAAGAATAATGGCTCAGATGAAGATCATTCTCCAACTCGTAGCCATGCTGATGATAATGACCGAGCAGCTGATGACGAAGATGATGATGACGTGCAGTGGCAAACGGATACTTCTTTAGAGGCAGCCAAGCAGCGTATTCAGGAGCAGTTGAGTGCTGTCACTGCAGATATGGTCATGCTCTCAACTACTGAAGAGAACAAGTCGTCAAAGAAGTCATCTGAGCATGAGAAGTCTGCAGCCAATGGTAACAAGAATGGAAATGGAGTTTCTACACATGGTGCCCTCATTCAAGAAATCAAAGATTATTTGAAGAAAGGTGCATCCACAACCGATCTCAAATCATTCTTGGAATCACTCGCTGGAACTCGCCAAGAGATTGTGAACGCCTTAGTCGAAGCTCTATTTGATGGTGTTGGCAAAGGCTTCTCTAAGGAAGTAGTGAAGAAGAAGAAGTTCCTGGCTGTAGTTGCTGCTGTGGAAGGATCACAGATAATTCTTTTACGTGCCATTGAATCTTTCTGTCTCAACACAAGTCCAGAGGCGGGTAAGGAGGTTGCCCTTGTCCTGAAATCACTATACGATGGCGATGTAATAGAGGAGGAATTCGTACTAGAGTGGTACCAGCAGGGTGTGGCTGGTGCAAACAAAAGCTCTCAAATCTGGAAATACGTAAAGCCATTCATCGAATGGCTCCAAAATGCTGAGTCGGAGACGGAAGAAGAGTAA 1335 43.52 MALQNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKIKKDVLKKKSTTTKDAVTKVPSKKKNNGSDEDHSPTRSHADDNDRAADDEDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTTEENKSSKKSSEHEKSAANGNKNGNGVSTHGALIQEIKDYLKKGASTTDLKSFLESLAGTRQEIVNALVEALFDGVGKGFSKEVVKKKKFLAVVAAVEGSQIILLRAIESFCLNTSPEAGKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13371939 13373273 + CsaV3_1G023010.1 Csa01g01698 516195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01698 444 CDD W2_eIF5 293 442 - -
Csa01g01698 444 MobiDBLite consensus disorder prediction 148 223 - -
Csa01g01698 444 Gene3D - 2 104 - -
Csa01g01698 444 Gene3D - 292 444 - -
Csa01g01698 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 444 IPR045196 GO:0003743|GO:0006413
Csa01g01698 444 Coils Coil 431 444 - -
Csa01g01698 444 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Csa01g01698 444 MobiDBLite consensus disorder prediction 143 235 - -
Csa01g01698 444 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Csa01g01698 444 Coils Coil 159 179 - -
Csa01g01698 444 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Csa01g01698 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 444 - -
Csa01g01698 444 SUPERFAMILY ARM repeat 298 438 IPR016024 -
Csa01g01698 444 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Csa01g01698 444 Pfam eIF4-gamma/eIF5/eIF2-epsilon 366 444 IPR003307 GO:0005515
Csa01g01698 444 Gene3D - 105 145 - -
Csa01g01698 444 ProSiteProfiles W2 domain profile. 288 444 IPR003307 GO:0005515
Csa01g01698 444 MobiDBLite consensus disorder prediction 266 293 - -
Csa01g01698 444 SMART 542_3 353 440 IPR003307 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01437 Csa-Chr1:9975186 Csa01g01698 Csa-Chr1:13371939 2.54E-08 dispersed
Csa02g00833 Csa-Chr2:7549108 Csa01g01698 Csa-Chr1:13371939 7.17E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01698 K03262 - csv:101210873 768.459