Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01727 ATGTCGTCTCCCTCTCCAACTTCGCCGCCCGCCACTAACACTACCTCACCCCCAACTCCCACCACCAGCGCACCACCTCCGGCAACCCCATCTCTCTCACCGCCTCCTCCCGACTCTGCCTCTCAGCCTCCTCCTGCTTCTTCATCCCCGCCACCTTCCACTACAACTTCCCCGCCACCTCCGGATAGTTCCACTCCATCTCCGCCTACTTCTTCTCCTTCACCGCCAACCCCACCTTCCACCTCTTCGCCTCCGCCTCCCTCTACAAACTCGACTACTTCCCCACAGCTGCCTAGTCCGACGCCTCCTTCGGGTTCTGGTACACCTGCCAGTCCCGGAGATGATCTTCCCGGAAGAGATCTGCCTCCGCCGTCTTCCTCACCGTCGTCGGGAGTTTCGGCTGGACTTGTGGCTGGAGTCGCCATTGCTGGAGTGGTGGTGGTTGTTGTGGCGTTGATTATTAGGTTTTTGTGTATGAGAAAGAAGAGAAGACGCGACGAAGAGGCTTACTACCGGCCGCCGCCGCCACCCCCGTCGTATAAAGATGGCCCATATGGTCAACAACAGCACCACTGGCAATCACATCCCCCGCCGCCGGCGGATCATATTGTTGGGGCAGTGCCGAAGCCATCTCCTCCACCAGCACCACGGCCACAGCTGTCACCTCCGATTATAAACAGCAGTGGAGGCTCTGGATCTAATTATTCAGGGTCTGAAAATTCGCTTGTTCCTATCCCATCTTCTATTCCCTTAGGCTTTTCACAAAGCAGCTTTACTTATGAAGAGTTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAATCTCCTTGGACAAGGTGGGTTTGGTTATGTGCATAAAGGGGTTCTTCCAAATGGAAAGGAAGTGGCAGTGAAACAACTTAAAGCTGGAAGTGGGCAGGGAGAACGTGAATTTCAAGCTGAAGTGGAAATAATCAGCCGTGTTCATCATAGACATCTTGTTTCCTTAGTTGGATATTGCATTACTGGCTCCAGAAGATTGCTGGTCTATGAATTTGTTCCTAACGACACGTTGGAGTTTCACTTGCATGGGAAAGGACGACCCACCATGGATTGGCCAACGAGATTGAAAATTGCTCTTGGATCTGCCAAGGGATTGGCTTACCTTCATGAGGATTGTAATCCTAAGATCATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATTTGAAATTTGAAGCAAAGGTTGCTGATTTTGGGCTTGCTAAGTTGTCTTCTGATGTTAATACCCATGTTTCAACCCGAGTCATGGGAACTTTTGGATACCTTGCTCCAGAATATGCTTCAAGTGGGAAACTCACCGAGAAATCAGATGTCTTCTCCTTCGGAGTGATGCTTTTGGAGATGATTACTGGACGTAGACCTGTAGATACGACTCAATCATTCATGGACGATGGATTGCTCGATTGGGCAAGGCCGTTACTACTTCGGGCCACGGAAGATGGGCACTACGACAGTTTAGTAGATCCAAAGCTGAGAGATAACTACGACCACAATGAAATGGCTCGCATGGTTGCTTGTGCAGCTGCCTGTGTGCGCCATTCTGCGAGGCGCCGACCACGGATGAGTCAGGTGGTTCATGCTCTTGAAGGTGAATCCTCACTTTCTGATCTTAACGAAGGGATTCGGCCTGGACATAGCACTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCGTTGGCAAGTCAGGAGTATGGCAGTGAGTACAGTGAGCAGACGAGCGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGACGGGGATGAAAGAAAGTGGAGGTTTTAGTGGAAGCTCATGA 1920 50.62 MSSPSPTSPPATNTTSPPTPTTSAPPPATPSLSPPPPDSASQPPPASSSPPPSTTTSPPPPDSSTPSPPTSSPSPPTPPSTSSPPPPSTNSTTSPQLPSPTPPSGSGTPASPGDDLPGRDLPPPSSSPSSGVSAGLVAGVAIAGVVVVVVALIIRFLCMRKKRRRDEEAYYRPPPPPPSYKDGPYGQQQHHWQSHPPPPADHIVGAVPKPSPPPAPRPQLSPPIINSSGGSGSNYSGSENSLVPIPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSRRLLVYEFVPNDTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGHYDSLVDPKLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGESSLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEQTSEYGLYPSGSSGDGQTTREMEMRTTGMKESGGFSGSS* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13899884 13903408 + CsaV3_1G024290.1 Csa01g01727 516224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01727 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Csa01g01727 639 MobiDBLite consensus disorder prediction 598 623 - -
Csa01g01727 639 MobiDBLite consensus disorder prediction 1 107 - -
Csa01g01727 639 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 12 624 - -
Csa01g01727 639 MobiDBLite consensus disorder prediction 201 221 - -
Csa01g01727 639 SMART serkin_6 270 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01727 639 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 12 624 - -
Csa01g01727 639 MobiDBLite consensus disorder prediction 1 133 - -
Csa01g01727 639 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Csa01g01727 639 MobiDBLite consensus disorder prediction 166 239 - -
Csa01g01727 639 SUPERFAMILY Protein kinase-like (PK-like) 244 543 IPR011009 -
Csa01g01727 639 Pfam Protein tyrosine and serine/threonine kinase 274 543 IPR001245 GO:0004672|GO:0006468
Csa01g01727 639 Gene3D Phosphorylase Kinase; domain 1 247 345 - -
Csa01g01727 639 MobiDBLite consensus disorder prediction 222 239 - -
Csa01g01727 639 ProSiteProfiles Protein kinase domain profile. 270 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01727 639 MobiDBLite consensus disorder prediction 598 639 - -
Csa01g01727 639 Gene3D Transferase(Phosphotransferase) domain 1 346 555 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01727 Csa02g00125 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01727 Csa-Chr1:13899884 Csa02g00125 Csa-Chr2:866565 0 dispersed
Csa04g00173 Csa-Chr4:992582 Csa01g01727 Csa-Chr1:13899884 2.33E-94 dispersed
Csa07g02098 Csa-Chr7:20226661 Csa01g01727 Csa-Chr1:13899884 6.42E-17 dispersed
Csa01g01727 Csa-Chr1:13899884 Csa05g03083 Csa-Chr5:30852236 1.00E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77803 PF07714 PK_Tyr_Ser-Thr 4.10E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01727 - - csv:101222748 908.672