Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01728 ATGCTTTTCGTGTGTTTACAGATGCACAGCCTATTGCAGGTGTCGTACACTTCATGGTTCCTTGATGCATTCAACTATGCAATTGCCACAAATATGGATGTATTAAATTTAAGCATTGGTGGACCAGATTACTTGGATCTTCCATTTGTAGAGAAGATTTGGGAAATAACAGCAAATAATATCATCATGGTTTCTGCAATTGGAAATGATGGACCACTTTATGGGACTTTAAACAATCCTGCAGATCAGAGTGATGTCATTGGTGTTGGGGGTATTGACTACAATGATCATATTGCTTCATTTTCCTCACGTGGCATGACTACTTGGGAGATGCCTCATGGTTATGGTCGTGTGAAGCCCGATGTTGTTGCATATGGTCGGGAAATTATGGGATCCAAAATTAGTACTGGATGCAAAAGTTTATCAGGCACTAGTGTCGCTAGTCCTGTTGTTGCTGGTGTGGTATGTCTACTTGTTAGTGTCATCCCTGAAAGCCAGCGGAAGGTTATTTTAAATCCAGCCAGCATGAAACAAGCACTTGTTGAGGGGGCTGCAAAGCTTGCTGGTCCTAATATGTATGAGCAAGGAGCTGGCAGAGTTGATCTGTTAGAATCGTATGAAGTACTTAAGAGCTACCAACCCAGGGCAAGTATCTTCCCTGGTGTTCTTGACTATACAGATTGCCCTTATACATGGCCCTTTTGCCGCCAACCTCTTTATGCAGGTGCGATGCCTATTATTTTCAATGCTACCATTTTGAATGGTATGGGTGTAATTGGCTATGTTGAAGGTCAACCAACTTGGCACCCTTCTGATGAAGAAGGCAATCTCTTAAGTATTCACTTCACTTATTCTAAGGTCATTTGGCCATGGACTGGTTATATTGCACTTCATATGCAAATTAAGGAAGAAGGTGCACAATTTTCTGGAGAAATTGAGGGCAATGTGACTCTAACAGTATATAGTCCTCCATCAAGAGGCGAGAAGAACCGCAGGATTAGTACTTGTGTCCTACAGCTGAAGCTAAAAGTAGTTCCTACACCTCCAAGATCAAAACGAATTTTATGGGATCAATTTCATAATATCAAATATCCTCCTGGTTATATTCCTAGAGATTCCTTGGATGTACGCAATGACATTCTGGACTGGCATGGAGACCACCTGCACACAAATTTTCATATCATGTTTAACATGTTAAGAGATGCTGGGTACTATGTTGAAACCCTTGGTTCTCCTCTTACATGCTTTGATGCTCGTCAATATGGAACACTTCTACTAGTGGATCTTGAAGACGAATACTTCAAAGAGGAAATTGAGAAGTTGAGAGACGATGTTATGACTACTGGATTGGGATTGGCTGTGTTTTCCGAATGGTATAATGTAGAAACAATGGTAAAGATGAGATTCTTTGATGATAACACAAGAAGTTGGTGGACACCAGTTACTGGAGGTGCAAATATTCCTGCACTCAATGATCTCTTAGCCCCATTTGGCATTGCTTTCGGGGATAAGATTTTGAATGGTGATTTTTCTATTGACGGTGAACAGAGTCGGTATGCGTCAGGAACAGATATTGTGAGGTTTCCACAAGGTGGTTATATGCATAGTTTCCCTTTCGTTGATAGCTCAGAGAGTGGGGCAGCTCAGAGCATACTAACATCTAGCATGAGTAAGGCTGACTTTCCGATTCTTGGCCTATTAGAGGCAGGAGAAGGCCGCATTGCAGTCTATGGAGATTCCAATTGTCTAGATAGCAGCCATATGGTTACAAATTGCTATTGGCTGCTGAGAAAAATATTAGATTTTACAAGTGCAAATATTAGAGATCCGATACTATTCACCAAGTTTTCCAAACGAAATTCACCTCTGTATCTAGAAGACAGCAAACTACCATCTCGAAGAAGTGATGTAAATTTCTCTTTGTATTCTGCCGTTGCTCGAAAGGAATTGATATGCAGAAGTGATTCTAGGTTTGAAGTATGGGGGACCAAGGGATACAGTATACAAGTCCGGGGAAGAAATCGAAGACTTCCTGGATTTCCTGTAATTGACTTGGGACGAGGCTTGAATTCTACTTCAGAAGGTTCTTCAATGGGACCTCCGAAGTCGTCTTCAAAAGACCGAAGTGATACATATGGAAACCGATATTTAAGCTTGTTCTACCGGGATGAGCCTGACATGCCGTTGATTGTTCCTAATCATTGGCTTGTTCCTGCTGTAGTTGCATTAACAGGGCTTTTTCTCCTTTTGAGCTTTTGGCGGATTAGACAGAAGCGACGACGGCGACGAAGAGGATCTGGATCTGCACGTTTTTCCAATATATAG 2325 41.63 MLFVCLQMHSLLQVSYTSWFLDAFNYAIATNMDVLNLSIGGPDYLDLPFVEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMTTWEMPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPESQRKVILNPASMKQALVEGAAKLAGPNMYEQGAGRVDLLESYEVLKSYQPRASIFPGVLDYTDCPYTWPFCRQPLYAGAMPIIFNATILNGMGVIGYVEGQPTWHPSDEEGNLLSIHFTYSKVIWPWTGYIALHMQIKEEGAQFSGEIEGNVTLTVYSPPSRGEKNRRISTCVLQLKLKVVPTPPRSKRILWDQFHNIKYPPGYIPRDSLDVRNDILDWHGDHLHTNFHIMFNMLRDAGYYVETLGSPLTCFDARQYGTLLLVDLEDEYFKEEIEKLRDDVMTTGLGLAVFSEWYNVETMVKMRFFDDNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSIDGEQSRYASGTDIVRFPQGGYMHSFPFVDSSESGAAQSILTSSMSKADFPILGLLEAGEGRIAVYGDSNCLDSSHMVTNCYWLLRKILDFTSANIRDPILFTKFSKRNSPLYLEDSKLPSRRSDVNFSLYSAVARKELICRSDSRFEVWGTKGYSIQVRGRNRRLPGFPVIDLGRGLNSTSEGSSMGPPKSSSKDRSDTYGNRYLSLFYRDEPDMPLIVPNHWLVPAVVALTGLFLLLSFWRIRQKRRRRRRGSGSARFSNI* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13903554 13910005 - CsaV3_1G024300.1 Csa01g01728 516225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01728 774 PANTHER MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE 12 497 - -
Csa01g01728 774 MobiDBLite consensus disorder prediction 689 710 - -
Csa01g01728 774 ProSitePatterns Serine proteases, subtilase family, serine active site. 143 153 IPR023828 -
Csa01g01728 774 Pfam Subtilase family 16 190 IPR000209 GO:0006508|GO:0008236
Csa01g01728 774 Gene3D Peptidase S8/S53 domain 7 217 IPR036852 GO:0004252|GO:0006508
Csa01g01728 774 PANTHER MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE 526 688 - -
Csa01g01728 774 MobiDBLite consensus disorder prediction 688 710 - -
Csa01g01728 774 ProSiteProfiles Serine proteases, subtilase domain profile. 1 209 - -
Csa01g01728 774 PANTHER PEPTIDASE S8 526 688 - -
Csa01g01728 774 PANTHER PEPTIDASE S8 12 497 - -
Csa01g01728 774 SUPERFAMILY Subtilisin-like 14 202 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01728 Csa-Chr1:13903554 Csa05g00754 Csa-Chr5:5213871 4.88E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01728 K08653 - csv:101222509 1528.84