Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01729 ATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCACCACCTCTTCCATCCAGACAGGTTGGAAGTACTTCAACATCTTCACATGTTCCCCCTCCTCCACCACCGCCTGCTTCCACCAAAGGCTCCCCTTCATCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGCCTTCAAAATCAGGTGAACTGTCTGGTTCTCTTCTTGGAAATGGTTCATCTACGTCTTCCTCTCCTGTGCCACCAAGTGGTTCTCCATTAGGTATAAAGGGACGGACTTTGTCACGCACCATAAGTTCAAGAACACATATAACCAAGAAATTGAAGCCACTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCCCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCTCCAAAAGTCGAGTGGACGCGGTTCAGTTGGCAATAAGCCTGAGAAAGTACAACTGATTGATCACAGACGTGCTTACAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCATGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTCGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGAGAAGCTCGGTAAATGTGAACAGGTATAG 777 46.59 MTSRQVGSTSTSSPVPPPPPPLPSRQVGSTSTSSHVPPPPPPPASTKGSPSSVPSAPPPPTLSGRGPSKSGELSGSLLGNGSSTSSSPVPPSGSPLGIKGRTLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQLQKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQV* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13913836 13920667 - CsaV3_1G024310.1 Csa01g01729 516226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01729 258 MobiDBLite consensus disorder prediction 1 110 - -
Csa01g01729 258 PANTHER FORMIN-J 11 257 - -
Csa01g01729 258 ProSiteProfiles Formin homology-2 (FH2) domain profile. 107 258 IPR015425 -
Csa01g01729 258 MobiDBLite consensus disorder prediction 67 92 - -
Csa01g01729 258 SUPERFAMILY Formin homology 2 domain (FH2 domain) 38 257 - -
Csa01g01729 258 Gene3D Formin, FH2 domain 105 258 IPR042201 -
Csa01g01729 258 MobiDBLite consensus disorder prediction 34 64 - -
Csa01g01729 258 Pfam Formin Homology 2 Domain 114 257 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01729 Csa-Chr1:13913836 Csa04g02634 Csa-Chr4:25716565 3.47E-67 dispersed
Csa01g01729 Csa-Chr1:13913836 Csa01g01880 Csa-Chr1:15792317 1.34E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01729 - - csv:116404101 414.075