Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01730 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAACCCCCCGATGGCCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACGGATGCTTGGAAGGAAGAGAACTATGAAGTTTACTTGGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCATTCTTGGTATTCAATTTTAGGAGATTAGAGATGCAGAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGCTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTTTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCAGCTCTCTTGATTTATAGAAAACAATATAGTGGCGAACAAAGAACATTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTGCATTTTTTGTCTCCTATGAATCCGATTCCATCTCAATTAAGGTATCTGCAATATGTTGCGAGGAGGAATGTAGCCTTAGAATGGCCTCCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGGTTTATTCCAAATTTTGATGGGGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTGGTCAGTGATCGAACTCCTAAAGTTCTTTATTCAACTCCAAAAAGAAGCAAAAATGTCCGAGCTTTCAAACAGTTTTCTAAAGAAAAAAGTAAATTATTTTCTTCTCATAGCATCTATAGCTGGTCAAGTAGGAAAGTTTGGGATTTGTTGTCTGTAAACTGGAGCCAGGAATGGACAGCATGTGATGTTGTTCTTGAGTGCATCACCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATTGATACATTGTGGAATGCTAAAGATAAATTTCCAAAAGACTTCCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTCGTACTGTTGCAAATGATGTACTTTGCATTGAGGAAGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAGGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAAGAGAAGCCAGACAATAATTCTCTTTGGAGTACGCAAGTTAGTTCTTTACTTCAGTGTGCAAGTCCCAGAAAACTTCCACAGAAGTTCACATTGGAGAACAGAAGTAAATTCCTAGAGAAGGAAGGATCTAGTCCAACCTCTAAATTTTCTCCGGATGCTGCTAAAACCGAACAAAACAATGAATCTAATTCAGTATTCCAACGGGTGCCTCAATCTCCAGACCCTTTTCCACTCACCTTTGACATGTTGCAAGATTCCCCAATCTCAGATAGAAGTGATAGGACCTCATACAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGAAGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTTCGGGATGCAACATTGGATGTTTCTCTAGCACCTGAATCTCCTCAGACTAAAAATTTATATACAGAGACAACCATACCACCACCTCCTCCTCTCCCACAACTTTCCACTGATATTTATGCTGCAAATTCCCTACCTTCTCCTCACTCTACTTCAACTGAATCACTACTTCAGTCTAATAACTTTTCAACTCTACAACCAAATAGAGCTTCACTCACTGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAGCCATCATCCCTTCCCTGTCTTGCCTCCACCACCACCTCCTCTCCCTATGA 1938 40.66 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLEMQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLSPMNPIPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRAFKQFSKEKSKLFSSHSIYSWSSRKVWDLLSVNWSQEWTACDVVLECITLHDDMEFEEMMFRAMFNNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTRTVANDVLCIEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKPDNNSLWSTQVSSLLQCASPRKLPQKFTLENRSKFLEKEGSSPTSKFSPDAAKTEQNNESNSVFQRVPQSPDPFPLTFDMLQDSPISDRSDRTSYSASVGSHSFIDSEGEIDVSHLKTASSSFRDATLDVSLAPESPQTKNLYTETTIPPPPPLPQLSTDIYAANSLPSPHSTSTESLLQSNNFSTLQPNRASLTEEIEIYSKDQNQLSAIIPSLSCLHHHLLSL* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13925596 13929208 - CsaV3_1G024320.1 Csa01g01730 516227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01730 645 Pfam C2 domain of PTEN tumour-suppressor protein 199 359 IPR014020 -
Csa01g01730 645 PANTHER - 295 419 - -
Csa01g01730 645 PANTHER - 1 262 - -
Csa01g01730 645 MobiDBLite consensus disorder prediction 460 488 - -
Csa01g01730 645 ProSiteProfiles C2 tensin-type domain profile. 199 360 IPR014020 -
Csa01g01730 645 PANTHER FORMIN-J 295 419 - -
Csa01g01730 645 PANTHER FORMIN-J 1 262 - -
Csa01g01730 645 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 360 IPR035892 -
Csa01g01730 645 SMART PTEN_C2_2 197 359 IPR014020 -
Csa01g01730 645 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Csa01g01730 645 Gene3D - 198 362 - -
Csa01g01730 645 MobiDBLite consensus disorder prediction 455 488 - -
Csa01g01730 645 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01730 Csa-Chr1:13925596 Csa04g02634 Csa-Chr4:25716565 0 dispersed
Csa01g01730 Csa-Chr1:13925596 Csa01g01880 Csa-Chr1:15792317 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01730 - - csv:116404101 1116.29