Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Csa01g01768	ATGGAGAAAAGGTGTGGTTGTTGGGGTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGTTTCCAGAGACTCTCCAAATACCATTCCTCGAACTAGCCTAGTTTATGATTCTGCTACCGAAACACGGTATTTAAATGCTAGCAACAGGGATCTCTGTACCTTGAATGAAGTTGAGCTAGTCTCTGATAATGCCAATCCATCACAATCGGATAATAAAAAATCAAGCAAACTGCTTCAGTTCACTTTTTATGAGCTCAAGGCAGCAACTGGAAACTTTAGACCTGATAGTATTCTTGGGGAAGGTGGATTCGGATTTGTCTTTAAAGGATGGATTGAGGAGAATGGGACAGCCCCTGCAAAACCCGGATCAGGAATTACAGTAGCTGTTAAGAGCTTGAAACTTGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTCGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCAACGTTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAGAACCATCTTTTCAGAAGAACTATTCCTCTTCCATGGTCCAATAGGATTAAGATTGCCCTTGGAGCGGCGAAGGGATTGGCCTTTCTCCATAGTGGCCCAGTACCTGTTATCTACAGAGATTTTAAGACATCCAATATATTGCTTGATTCGGATTACAATGCCAAGCTTTCTGATTTTGGTTTTGCAAAAGCTGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGACATCTGACATCGAAGAATGATGTTTATAGCTTTGGTGTTGTGCTTCTCGAGATTGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCAAGCGGAGAACAAAACCTTGTCACATGGGCTCGACCATATTTAGCTGATAAAAGAAAGCTATATCAAATAGTAGATCCCCGCTTGGAATTTAACTATTCCATTAAAGGTGTGCAGAAAGTCTCCCAGCTTGCTTGCAGTTGCCTCAGCAGGGACCCAAAACTACGTCCAACCATGGACGAAGTCGTGAAGATTTTGACTCCACTACAAGATCTCAACGACCTCGCCATCCTAACATCTCACTGCCGCTCATCTTCACAAGGGAGGCGCAAGAAGAAACCCGAAGGACTAACCTACACCCAAAGCTTCAGAGCTTCTCCATTGAACACTGGAAAGCAGCATGTAAGGTGA	1275	43.61	MEKRCGCWGVLTRTVSGVCKSSVSRDSPNTIPRTSLVYDSATETRYLNASNRDLCTLNEVELVSDNANPSQSDNKKSSKLLQFTFYELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDQRLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHSGPVPVIYRDFKTSNILLDSDYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVTWARPYLADKRKLYQIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKILTPLQDLNDLAILTSHCRSSSQGRRKKKPEGLTYTQSFRASPLNTGKQHVR*	425

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	14453580	14458138	-	CsaV3_1G026680.1	Csa01g01768	516265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Csa01g01768	424	PANTHER	OS01G0588500 PROTEIN	56	393	-	-
	Csa01g01768	424	PANTHER	OS01G0588500 PROTEIN-RELATED	56	393	-	-
	Csa01g01768	424	ProSiteProfiles	Protein kinase domain profile.	95	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Csa01g01768	424	SUPERFAMILY	Protein kinase-like (PK-like)	78	385	IPR011009	-
	Csa01g01768	424	Pfam	Protein tyrosine and serine/threonine kinase	99	374	IPR001245	GO:0004672\|GO:0006468
	Csa01g01768	424	MobiDBLite	consensus disorder prediction	407	424	-	-
	Csa01g01768	424	CDD	STKc_IRAK	101	377	-	-
	Csa01g01768	424	Gene3D	Phosphorylase Kinase; domain 1	69	180	-	-
	Csa01g01768	424	Gene3D	Transferase(Phosphotransferase) domain 1	181	391	-	-
	Csa01g01768	424	ProSitePatterns	Protein kinases ATP-binding region signature.	101	133	IPR017441	GO:0005524
	Csa01g01768	424	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	223	235	IPR008271	GO:0004672\|GO:0006468
	Csa01g01768	424	MobiDBLite	consensus disorder prediction	391	424	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Csa01g01768	Csa02g00212	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Csa01g01768	Csa-Chr1:14453580	Csa02g00212	Csa-Chr2:1468123	0	dispersed
	Csa03g03006	Csa-Chr3:28576382	Csa01g01768	Csa-Chr1:14453580	1.49E-61	dispersed
	Csa01g01768	Csa-Chr1:14453580	Csa05g02971	Csa-Chr5:30024348	1.18E-180	transposed
	Csa01g01768	Csa-Chr1:14453580	Csa05g02420	Csa-Chr5:26216079	1.09E-180	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	77806	PF00069	Pkinase	9.30E-46	CL0016	Csa	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Csa01g01768	-		-	csv:101203514	859.366