Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01842 ATGGCATTTGATCAGAACGCAATTCCTACAGGCTTGCGGCCTTTAAATGTAGCTAGAACTTTAGTTGAAGATTCTCATCTAACGCTGGTTGCTAATACTGGTCAAAACCCCCAAAGGGTTACTCCTTTGCATCCCTACGACATTGCCAATGCAGACAATTTGCCTCTTCCTTGTAAGGGGAATGTCTCTGATATGGGACTTGCTGAGCTAGGATATCGAAATTTTGTTGCTGGTGTTACTGCATGGTGCCCTCGAATGCCTCCTCCCCTTGCGCATACTGCAACGGTTCCTGCCGTAGGACTTGGTTATGTCATGAGCAATCGTGGTGGTGCCAATGCCATTGAGCTTGCTAGTAGTTGCATGACAGTTGGGCCTAATCATAATACAAATTTAGGTCATCGAGTTGGGGGAGGTGGACTGGAATTTGTATGCAGTAATACCTCAATGGGATCTGGGGATAGTACCAATTTATGCAATAAGGTGACTGGTAATGATGATCAGATTAGTAGTGATAGTACTTCTGGATTTAGCTCCCACTTGAGGAGTTCGGTTGGTGGAAATAGTGGAAATGTGGTTGATCAAGTAAGTGAGGAGGGTGGAGATGGTTCCATTTCAAAAAAGAAAGTTAAGTTTATGTGCAGTTTCGGCGGCAAGATCTTTCCTAGACCGAGTGATGGTATGTTGAGATACATTGGAGGCCAAACAAGGATTATAAGTGTTAGAAGAGATGTGACTTTCAATGAGCTTAATCGAAAGATGGCTGATACATGCGGGCAGGCTGTGGTTATAAAGTATCAGCTCCCTGATGAGGATCTTGATGCTTTAATATCTGTTTCATGCCCTGATGATCTTGATAATATGATGGATGAGTATGAGAAGCTGGTTGAGAGGTCTTCAGATGGATCGACTAAATTGAGGATGTTTTTGTTCTCTGCTTCAGAACTTGACTCTTCAGGTATGGTGCAATTTGGCGATTTGCATGATAGTGGGCAGAGATATGTTGAAACGGTGAATGAGATATTTGATGGTGTTGGTGGCCGTATTACTAAGAAAGAGAGTTGTGCAAGTGCTACCTCAACTCAGAATTCTGACTTAAGTGGGACTGAGGCAATGGATATCCCAAATAATGATCTAGGGGTTGTGAGCGGACCTCCATCCACAACATTGCCCTTACCTGGAGGAAATTTAGGTACTGCAGTTGCTATTGACCCTGGATTGGTGAAGGTGGATCCCGTCTCTGCAGTTTTGTTAGATGCCTCTGCTGTTCCATCAAGCATTCCTTTTGTTAACTCTGTTCCTCCTGGAGCTTCTTTCCAGCCTGAGACAGAGTTAGGAAGGTCTGTGCCTGTTACTCTAATGCAGCAGCAACCGGGTGTTGACTTTTCTCCACCCGTGTCTCATTTACAGCCTACTGGTGATCCTCGACAAGCAGCATGTGTGAACTTTATACAACTTCGTCCACAACTAGGCTTTCCAAATTCCCATCATATAGGAGCATCTGGATCTGTGTTTATACAACAACCAAATACTCTTGGAATTACTCCTCATCAGTTTGTCCCTGCAGTTCACATGACAATGGCTCCTTCTTCTCGACCCAGTATTATGCCAAATGCCTATCAATCGATGGTTCAATATCCACAATCCCAGACAGAATGTTTTTCCAACCCAAGCACATTTGGTCCAAGGGTTGTCCAGCTATCAGCAGAACAAGGCTACAACTCAGCTCAGGTTCCAGCTCCTCCAATATCAGTAGGGGTTGGATTTGGTTTACATCAGGTACCTTGGCCTGATCAGACAGTTATATCTGATGAATTGGTATCTCATCATCAGACAACTTTTTCTGAGAAGATCGAGAGGTTGGATGACAGTTACTTCTGCCAGAAAGCAATGCCACATGCTCATTCCAATTCTTCATTGCAGAATCAAAGTGAAAATTTAGCAGACCTTGTAACTGATTCAAAATTTTCGTATTACAGTCATCACCTTGAAGATCAATTAACAGCCCATCCAATGAAAAATGTCACAGAAACTGTAGCTCTAGGGCAATCAACAATTGAACATGGTGTTGGAGTTCAAACCAGAATCTTTAATCCAATGGATCCAGAAGTTGAAAACCTTTCTGTGGACGTTCTTAGCTTCCCACAACATTTGGAGGACCGATATGAGAATGAAAACACTCTAAAAGATCAATGTAATCATGGTTGTGGTAGGATCTCAGCTCCGCAAGGTGCTCTTGGGAGGCAAGGTGATATTCAGTCACCCCATGTTGCTATTGTAGCCCAGAATCCTCAGTCTGGTGAAGTTGATACTCTCCAGCGCCATCATGTAGCTGTAGAGAATCAGTTCCATCCAAATTTAGTCGTGGACAGACACAATATTTGCTTTGGCGGTGCTCCTTTTCTTGCTTCAGAGTACAACACTCATGAAAATCCGGAAGAATACTCTAATAGTCATCATGGCATTATTTCAAACCAAAATGCTACCCACACTGGTATTCAGTATGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTCTAAGTATATGCCCAACTGATATTTGTGCTAATTTGGATCACTGCAAATCACCCATTGAAAGAACTAGGAAGGAGGACAATTTTGGAACCTGTTCACAACCAGTCTCACAGAGGGAAATTCTACTAGATAACAACTTTGTAAAGCCAATAGCGTTTCTTAACCCAAATCACATAGAATCAACTACCTTCACTTGCTCTTCATTAGAGGTTCCCTACTTGATGAATGAACGACCTGCTGAGTCTAGTGAAGTGGCACAATCTTCTGTCGGGGGCTTTCCTGGAACATTATCACAAGCAGAAAATGGGATACAATATTTAGAATCCAATGAAGTCTGTCATAGCAGAAATCTCCACCTATTTGACATGAAGACTGAACAAAGAAATAATGAAGTCTCAGTTTCTGCTGAATGGAAGGACCCTTCTCTATTTGAATCCGGGATGGTATCTGGTGATGTTGAATCTGTGTCTTTGCCTATCAGGACTGGAAATGTACAGGACACTGCGAATTCACTTTTCAGCAATCAGGATCCTTGGAACTTGCAGCACGACGCTCATCTTTTGCCTCCTAGACCAAATAAAATCCAAGCAAGGAATGAAGCCCTTGCCACCAGGGAACCCTTGACAGAGACTCCTTTCAGAAACGTTGGTGAACTAAATGTGGAAGCGTTACTGGATGATGGATTATGTCACCCATTGGTTAATTCAAACAAGGGCTCTGCAGAGGAACAAATTAGGAAAGATCTCCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCGGCTCAATCCTCCAACTCCGAATTGAATGAAAGAAGCAATTCAATTTGTGAGACTAGCACCGAAAGAGATGTTCAAAATAATGATGATGGCAGGACAAGACATTCAGATAAAGCGAATCTTGGTTTTCCAATGTCAGAAGGCCTTGGCCGCTTGCAGGTAATAAAAAATAGCGATCTTGAAGAATTAAGAGAATTGGGGTCTGGCACATTTGGCACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCTATCAAACGAGTTAATGATAGGTGTTTTGCTGGGAAGCCTTCTGAACAAGATCGCATGAGAGAAGATTTTTGGAATGAAGCAATTAAGCTTGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTATGGTGTCGTGCTTGATGGCCCTGGGGGATCTGTGGCCACAGTAACAGAATATATGGTCAATGGTTCGCTTAGAAATGCTTTGTTGAAGAATGAAAAGAGTCTTGACAAGCGGAAGCGCCTGTTGATTGCAATGGATACAGCTTTTGGAATGGAATACCTGCACAGAAAGAATATTGTGCACTTCGATTTGAAAAGTGATAATCTACTGGTCAATCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTGTCAAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGAGGAACACTTCCATGGATGGCACCCGAGCTTTTGAATGGTAGCAGCAATATGGTATCTGAGAAGGTCGATGTGTTTTCCTTTGGTATTGTCTTATGGGAGCTCCTCACTGGAGAAGAACCTTACGCAAATTTGCATTATGGGGTTATTATAGGTGGCATAGTAAGCAACACATTGCGACCGGAAGTACCAGAGTCCTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCAGAGCCATTAGAGAGGCCAAGTTTCACTGAAATTGCAAATGAACTCCGCTCCATGGCTGCAAAAGTTCCTTCAAAAGTACCCAACTAA 4332 43.07 MAFDQNAIPTGLRPLNVARTLVEDSHLTLVANTGQNPQRVTPLHPYDIANADNLPLPCKGNVSDMGLAELGYRNFVAGVTAWCPRMPPPLAHTATVPAVGLGYVMSNRGGANAIELASSCMTVGPNHNTNLGHRVGGGGLEFVCSNTSMGSGDSTNLCNKVTGNDDQISSDSTSGFSSHLRSSVGGNSGNVVDQVSEEGGDGSISKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRRDVTFNELNRKMADTCGQAVVIKYQLPDEDLDALISVSCPDDLDNMMDEYEKLVERSSDGSTKLRMFLFSASELDSSGMVQFGDLHDSGQRYVETVNEIFDGVGGRITKKESCASATSTQNSDLSGTEAMDIPNNDLGVVSGPPSTTLPLPGGNLGTAVAIDPGLVKVDPVSAVLLDASAVPSSIPFVNSVPPGASFQPETELGRSVPVTLMQQQPGVDFSPPVSHLQPTGDPRQAACVNFIQLRPQLGFPNSHHIGASGSVFIQQPNTLGITPHQFVPAVHMTMAPSSRPSIMPNAYQSMVQYPQSQTECFSNPSTFGPRVVQLSAEQGYNSAQVPAPPISVGVGFGLHQVPWPDQTVISDELVSHHQTTFSEKIERLDDSYFCQKAMPHAHSNSSLQNQSENLADLVTDSKFSYYSHHLEDQLTAHPMKNVTETVALGQSTIEHGVGVQTRIFNPMDPEVENLSVDVLSFPQHLEDRYENENTLKDQCNHGCGRISAPQGALGRQGDIQSPHVAIVAQNPQSGEVDTLQRHHVAVENQFHPNLVVDRHNICFGGAPFLASEYNTHENPEEYSNSHHGIISNQNATHTGIQYDHLRPIVGNLESLSICPTDICANLDHCKSPIERTRKEDNFGTCSQPVSQREILLDNNFVKPIAFLNPNHIESTTFTCSSLEVPYLMNERPAESSEVAQSSVGGFPGTLSQAENGIQYLESNEVCHSRNLHLFDMKTEQRNNEVSVSAEWKDPSLFESGMVSGDVESVSLPIRTGNVQDTANSLFSNQDPWNLQHDAHLLPPRPNKIQARNEALATREPLTETPFRNVGELNVEALLDDGLCHPLVNSNKGSAEEQIRKDLQAVAEGVAASVLQSAQSSNSELNERSNSICETSTERDVQNNDDGRTRHSDKANLGFPMSEGLGRLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNEKSLDKRKRLLIAMDTAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGVIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPLERPSFTEIANELRSMAAKVPSKVPN* 1444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15509686 15517213 + CsaV3_1G028500.1 Csa01g01842 516339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01842 1443 CDD PB1_UP2 212 310 - -
Csa01g01842 1443 Gene3D Transferase(Phosphotransferase) domain 1 1255 1441 - -
Csa01g01842 1443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1292 1304 IPR008271 GO:0004672|GO:0006468
Csa01g01842 1443 SUPERFAMILY Protein kinase-like (PK-like) 1159 1429 IPR011009 -
Csa01g01842 1443 SMART serkin_6 1167 1433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01842 1443 MobiDBLite consensus disorder prediction 168 191 - -
Csa01g01842 1443 CDD STKc_MAP3K-like 1173 1430 - -
Csa01g01842 1443 Gene3D Phosphorylase Kinase; domain 1 1160 1254 - -
Csa01g01842 1443 MobiDBLite consensus disorder prediction 1130 1144 - -
Csa01g01842 1443 Pfam Protein tyrosine and serine/threonine kinase 1168 1430 IPR001245 GO:0004672|GO:0006468
Csa01g01842 1443 MobiDBLite consensus disorder prediction 1108 1129 - -
Csa01g01842 1443 PANTHER SERINE-THREONINE PROTEIN KINASE 165 1437 - -
Csa01g01842 1443 MobiDBLite consensus disorder prediction 1108 1149 - -
Csa01g01842 1443 Gene3D - 230 312 - -
Csa01g01842 1443 ProSiteProfiles Protein kinase domain profile. 1167 1434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01842 1443 ProSitePatterns Protein kinases ATP-binding region signature. 1173 1204 IPR017441 GO:0005524
Csa01g01842 1443 SMART PB1_new 223 312 IPR000270 GO:0005515
Csa01g01842 1443 SUPERFAMILY CAD & PB1 domains 224 316 - -
Csa01g01842 1443 PRINTS Tyrosine kinase catalytic domain signature 1249 1262 IPR001245 GO:0004672|GO:0006468
Csa01g01842 1443 PRINTS Tyrosine kinase catalytic domain signature 1286 1304 IPR001245 GO:0004672|GO:0006468
Csa01g01842 1443 PRINTS Tyrosine kinase catalytic domain signature 1357 1379 IPR001245 GO:0004672|GO:0006468
Csa01g01842 1443 PRINTS Tyrosine kinase catalytic domain signature 1401 1423 IPR001245 GO:0004672|GO:0006468
Csa01g01842 1443 Pfam PB1 domain 228 311 IPR000270 GO:0005515
Csa01g01842 1443 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 165 1437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01842 Csa-Chr1:15509686 Csa03g01125 Csa-Chr3:8860576 7.22E-32 dispersed
Csa07g00641 Csa-Chr7:4616583 Csa01g01842 Csa-Chr1:15509686 9.79E-29 dispersed
Csa01g01842 Csa-Chr1:15509686 Csa06g02656 Csa-Chr6:23385603 1.01E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77808 PF07714 PK_Tyr_Ser-Thr 1.40E-59 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01842 - - csv:101203826 2897.07