Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01854 | ATGGGTGACATTTCATTGGAAGATGTCAAGAATGAGAACATTGATCTAGAACGAATTCCGGTTGAGGAAGTTTTTGAGCAACTAAAATGCACAAAAGAAGGATTGAGTACAGCAGAAGGAGAAAAAAGACTCCAAATTTTTGGCCCAAACAAGCTTGAAGAGAAAAAAGAGAGCAAACTTTTGAAGTTTTTGGGGTTTATGTGGAACCCTCTCTCATGGGTCATGGAATGTGCCGCAATCATGGCCATCGTTCTGGCCAATGGAGGGGGTAAACCACCAGATTGGCAAGATTTTGTTGGTATCATTGTCTTGTTGATCATCAATTCTACCATTAGTTTCATTGAAGAAAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCACCCAAAACCAAGGTTCTAAGAGATGGAAAGTGGAAAGAAGAAGAGGCAGCAATTCTGGTTCCAGGAGATGTGATTAGTGTCAAACTGGGAGATATTATCCCAGCTGATGCACGTCTCCTAGAAGGTGATCCTCTTAAGATTGATCAATCTGCCCTTACAGGTGAATCTTTGCCTGTCACCAAACATCCTGGTGATGAAGTGTTTTCTGGTTCTACCTGCAAGCAAGGTGAGATTGAGGCCGTTGTTATTGCAACTGGTGTGCATACTTTCTTTGGAAAGGCAGCCCACCTTGTGGACAGCACCAACCAAGTTGGCCATTTCCAAAAGGTGTTGACAGCCATCGGAAACTTCTGTATATGCTCCATTGCTGTGGGAATGGTCATTGAGATCTTGGTGATGTATCCAATTCAGCATAGGGCATATAGAGAGGGAATTGACAACTTGTTGGTGCTTCTCATTGGAGGTATTCCCATTGCGATGCCAACCGTACTGTCAGTAACCATGGCCATCGGATCGCATCGCCTATCACAGCAAGGTGCCATTACCAAGAGGATGACAGCCATTGAAGAGATGGCTGGGATGGATGTTCTTTGCAGTGACAAGACTGGAACTCTCACCCTCAATAAGCTCACAGTAGACAAATCCTTGATTGAGGTTTTTGTGCCAAACATGGACAAAGACACTGTTATGTTGTTTGCTGCAAGAGCTTCCAGAGTTGAAAATCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGACCCTAAAGAGGCAAGAGCAGGAATAACTGAGGTACATTTTTTGCCTTTCAATCCCGTCGAAAAACGTACTGCCATTACCTACATTGATGGAGATGGTAACTGGCATAGAAGCAGCAAGGGTGCTCCTGAACAGATAATTGATCTTTGTGAGCTTAAAGGAGAAATAAGAAGGAAGGCTCATGAAATTATTGATAACTATGCTAACCGTGGTCTTCGATCCTTGGCAGTCGGTCGACAGACTGTTAAAGATAAAGACAAAGAGAGTGCTGGAGAACCATGGGAGTTTGTTGGTCTCTTGCCGCTATTTGATCCTCCAAGGCATGACAGTGCAGAAACCATTCGTCGAGCTCTTGAACTCGGTGTTAATGTTAAGATGATTACTGGTGACCAACTTGCTATAGGAAAAGAAACTGGTCGAAGGCTTGGAATGGGCACCAACATGTATCCATCATCGTCTTTGCTTGGCCAAAGCAAAGATGAGTCAATTGCTTCCATTCCTGTTGATGAACTCATTGAGAAGGCTGATGGGTTTGCAGGAGTATTTCCGGAACACAAGTATGAGATTGTCAAGAAACTTCAAGAGAGGAATCATATTTGTGGCATGACAGGAGACGGTGTCAATGATGCTCCTGCTCTCAAGAAGGCCGATATCGGAATTGCTGTGGCCGATGCAACCGATGCAGCAAGAAGTGCATCAGATATTGTTTTGACAGAGCCAGGGCTAAGCGTGATTGTGAGTGCTGTATTGACTAGTAGGGCCATTTTCCAGAGAATGAAGAACTACACTATATATGCAGTTTCCATTACAATCCGTATTGTTTTGGGATTCATGCTTGTGGCTCTCATTTGGAAGTTCGATTTCTCGCCTTTTATGGTCTTGATCATTGCCATCCTAAACGATGGAACCATCATGACCATTTCAAAGGATAGGGTCAAGCCATCACCTGTGCCAGACTCGTGGAAACTCAAAGAAATTTTCGCTACTGGTGTTGTCCTAGGAACATACATGGCCCTTATGACCGTAGTTTTCTTTTGGCTCGCCAATGAAACCAACTTCTTCACGAATACATTTGGTGTAAAACCACTCAAAGATCTTGCTGAGATCAATTCTGCTCTCTATCTTCAAGTTAGCATCATCAGTCAAGCTCTCATCTTTGTCACCAGGTCAAGAAGTTGGTCTTTTGTTGAATGCCCTGGTTTCTTGCTAGTTATTGCTTTCATTGCTGCTCAGTTGGTTGCCACTTTAATTGCTGTATATTCTGAGTGGAACTTTGCAAGGATCAAAGGTATTGGATGGGGATGGGCAGGAGCTATCTGGGTATTCAGTATCGTTACTTACTTCCCACTTGATGTTCTCAAATTCGCCATTCGTTACGGTCTAAGTGGAAAGGCTTGGGACAACATGCTTGAGAATAAGACGGCGTTTACGACTAAAAAAGACTACGGAAAAGGCGAAAGAGAGGCACAATGGGCGATAGCGCAACGTACAATGCACGGTCTACAACCACCAGAAACCATATTCCATGAAAAGAGTAACTACGAAGACCTTTCAGAGATTGCAGAACAAGCCAAAAAAAGGGCTGAAGTTGCTAGGTTGAGGGAGCTTCACACTCTAAAGGGCCATGTGGAGTCAGTAGTGAAGTTGAAGGGATTGGACATTGAAACCATCCAACAACACTACACTGTTTAA | 2847 | 43.73 | MGDISLEDVKNENIDLERIPVEEVFEQLKCTKEGLSTAEGEKRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMECAAIMAIVLANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMYPIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPNMDKDTVMLFAARASRVENQDAIDACIVGMLGDPKEARAGITEVHFLPFNPVEKRTAITYIDGDGNWHRSSKGAPEQIIDLCELKGEIRRKAHEIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERNHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMALMTVVFFWLANETNFFTNTFGVKPLKDLAEINSALYLQVSIISQALIFVTRSRSWSFVECPGFLLVIAFIAAQLVATLIAVYSEWNFARIKGIGWGWAGAIWVFSIVTYFPLDVLKFAIRYGLSGKAWDNMLENKTAFTTKKDYGKGEREAQWAIAQRTMHGLQPPETIFHEKSNYEDLSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV* | 949 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15592142 | 15597278 | - | CsaV3_1G028620.1 | Csa01g01854 | 516351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01854 | 948 | Pfam | haloacid dehalogenase-like hydrolase | 325 | 602 | - | - | |
Csa01g01854 | 948 | PANTHER | PLASMA MEMBRANE ATPASE | 1 | 928 | - | - | |
Csa01g01854 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 445 | 463 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa01g01854 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 560 | 576 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa01g01854 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 588 | 604 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa01g01854 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 619 | 644 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa01g01854 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 759 | 780 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa01g01854 | 948 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 34 | 805 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Csa01g01854 | 948 | Gene3D | - | 897 | 948 | - | - | |
Csa01g01854 | 948 | SUPERFAMILY | HAD-like | 325 | 635 | IPR036412 | - | |
Csa01g01854 | 948 | Gene3D | - | 94 | 814 | - | - | |
Csa01g01854 | 948 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 563 | 675 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa01g01854 | 948 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 101 | 349 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa01g01854 | 948 | SFLD | Haloacid Dehalogenase | 311 | 640 | - | - | |
Csa01g01854 | 948 | SUPERFAMILY | Calcium ATPase, transduction domain A | 132 | 229 | IPR008250 | - | |
Csa01g01854 | 948 | Coils | Coil | 899 | 919 | - | - | |
Csa01g01854 | 948 | Pfam | E1-E2 ATPase | 131 | 308 | - | - | |
Csa01g01854 | 948 | Gene3D | - | 132 | 216 | - | - | |
Csa01g01854 | 948 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 14 | 844 | IPR023298 | - | |
Csa01g01854 | 948 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 331 | 337 | IPR018303 | - | |
Csa01g01854 | 948 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 928 | - | - | |
Csa01g01854 | 948 | CDD | P-type_ATPase_H | 34 | 840 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Csa01g01854 | 948 | SFLD | p-type atpase | 311 | 640 | IPR044492 | - | |
Csa01g01854 | 948 | Gene3D | - | 326 | 625 | IPR023214 | - | |
Csa01g01854 | 948 | Gene3D | - | 341 | 488 | IPR023299 | GO:0000166 | |
Csa01g01854 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 179 | 193 | - | - | |
Csa01g01854 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 329 | 343 | - | - | |
Csa01g01854 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 494 | - | - | |
Csa01g01854 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 505 | 515 | - | - | |
Csa01g01854 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 588 | 607 | - | - | |
Csa01g01854 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 611 | 623 | - | - | |
Csa01g01854 | 948 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 81 | IPR004014 | - | |
Csa01g01854 | 948 | SMART | Cation_ATPase_N_a_2 | 15 | 87 | IPR004014 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g01854 | Csa02g00252 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01854 | Csa-Chr1:15592142 | Csa02g02323 | Csa-Chr2:20671660 | 0 | dispersed | |
Csa04g00175 | Csa-Chr4:1008500 | Csa01g01854 | Csa-Chr1:15592142 | 0 | transposed | |
Csa01g01854 | Csa-Chr1:15592142 | Csa02g00252 | Csa-Chr2:1711130 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01854 | K01535 | - | csv:101214655 | 1817.36 |