Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01861 ATGACTGTGGAGGGTCATTCTGTTGCTGTAGTCGGTGATGATGGGGCTACTGATCATTTTCCTGTTGGGATGCGTGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTACTCGAATCTCTCCTCCGTAAATGCCAATATCATGTTACAACGACGAAGCAGTCCATTGAGGCTTTGAGGATGTTGAGAGAAAATAGGAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTCGTTATGAAGGGGATTGCACACGGTGCTTGTGACTATCTGTTGAAACCAGTTCGAATTGAGGAGTTGAAAAACATTTGGCAGCACGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCGAAAAACAAGTTCCCTAGTCAAAATAAGGTTCAAAATGGAGGTAATGAAGTTGAACAAGGTTTCTCACCAACCAGTAATGCAGACAGCGCAAAATTCAACAGGAAACGGAAGGACCAAGATGATGATGATGACGACGAAGGAAAAGAGAATGGGCTTGATAGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTATGGTCAGTTGAGTTGCATCGGAAGTTCGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCCGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGCAAAGATGGCACTTACATGCGAATGGGTTCACTTGATGGATATGGAGATTTACACGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCATCTGGACTGATCCAGCAAAACTCCCAAAATTTGAACTGCGCCATTAATAACCTTGGCAAACTCCAACCAACTACAATGTTGTCTCCTAACCAAACTACTAATCTGCTGCAAGGAATTCCAACATCACTTGAGATCGGCCAATTGCAACACAGCAAGTCCACCACTTCCATTGGAGACTTCAATACAATGAATGATACTTCCGGGTTTGGAGTTCCCAACAGTTTTCCTGAAACTAGAGCAAATATTGGAAATTCAACCTATTCGGTTTCTCCTGCTCCATTGATGTTACAAGGAACGATACCAACATATGGAAATCAAACCTCCCTTAGAGTTGATCCGCTAAATGGAGAAACTTTTGACATAGACGTTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACATTTGTCTAGATTCTCAGCAACTTCATTGACCACCAATGAAGCTTATCCGAGTGATCAATTGCATTCAATGAACTCAGTCATTTCTTCTACCCCCTCGACGATTGGGAATATCTCAGTTGATTTTTCCTCTAGAAGTGCAGGTTCAGCTTCCTTACTGGATTCAAGAGACGTGCAATGCCAGACAGGGGTAGTTGGCAGTGTTATTCAATCTATGAATACCATGCCAAAGCAGAGTTGGGAAGAGCATAAACATGACTTCGGTCGGAACGTGCAGCATAATCTTGGTGCAATCAATTCTCTGGTTGCTAGCGATGGGAATCCAACTCCCTTAAACCAGAGTTTCAATCAGAATGGTGTCGTACGTGATAGAAAGGTTGGTTCATCTTTAATAGTCCCATCAAATGTTGCGTCACTGTCCTTCCCTCAACATGGTGTGGTTGAAAAATTGGGTCCTAACACAAAGACGAATGTGGATGGAAACTACCTTTTGAATCAGATGAAGTCACACGATGGATCAATTCAAGGAAGTTTCGAGTCCTTGGATGATATAATGAATTCGATAATCAAACGGGACTCTGCAAAATGA 2037 43.15 MTVEGHSVAVVGDDGATDHFPVGMRVLAVDDDPICLKVLESLLRKCQYHVTTTKQSIEALRMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSQNKVQNGGNEVEQGFSPTSNADSAKFNRKRKDQDDDDDDEGKENGLDSDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRMGSLDGYGDLHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQNSQNLNCAINNLGKLQPTTMLSPNQTTNLLQGIPTSLEIGQLQHSKSTTSIGDFNTMNDTSGFGVPNSFPETRANIGNSTYSVSPAPLMLQGTIPTYGNQTSLRVDPLNGETFDIDVGGSNFLDPDPSNGNWQGAAHLSRFSATSLTTNEAYPSDQLHSMNSVISSTPSTIGNISVDFSSRSAGSASLLDSRDVQCQTGVVGSVIQSMNTMPKQSWEEHKHDFGRNVQHNLGAINSLVASDGNPTPLNQSFNQNGVVRDRKVGSSLIVPSNVASLSFPQHGVVEKLGPNTKTNVDGNYLLNQMKSHDGSIQGSFESLDDIMNSIIKRDSAK* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15634051 15638413 + CsaV3_1G028690.1 Csa01g01861 516358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01861 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 675 IPR045279 GO:0009736
Csa01g01861 678 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Csa01g01861 678 SUPERFAMILY CheY-like 23 148 IPR011006 -
Csa01g01861 678 SMART REC_2 24 136 IPR001789 GO:0000160
Csa01g01861 678 MobiDBLite consensus disorder prediction 147 210 - -
Csa01g01861 678 MobiDBLite consensus disorder prediction 153 178 - -
Csa01g01861 678 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Csa01g01861 678 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Csa01g01861 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 675 - -
Csa01g01861 678 CDD REC_typeB_ARR-like 26 140 - -
Csa01g01861 678 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Csa01g01861 678 Gene3D - 207 270 - -
Csa01g01861 678 PIRSF RR_ARR_type-B 1 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Csa01g01861 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Csa01g01861 678 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Csa01g01861 678 Gene3D - 24 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01861 Csa-Chr1:15634051 Csa06g01765 Csa-Chr6:15531730 4.78E-108 dispersed
Csa03g00203 Csa-Chr3:1598704 Csa01g01861 Csa-Chr1:15634051 4.71E-14 dispersed
Csa03g04643 Csa-Chr3:40338558 Csa01g01861 Csa-Chr1:15634051 1.52E-14 dispersed
Csa06g01467 Csa-Chr6:12460237 Csa01g01861 Csa-Chr1:15634051 1.41E-22 dispersed
Csa07g00796 Csa-Chr7:5599626 Csa01g01861 Csa-Chr1:15634051 1.41E-22 dispersed
Csa04g01435 Csa-Chr4:14305828 Csa01g01861 Csa-Chr1:15634051 5.31E-22 transposed
Csa05g00009 Csa-Chr5:54545 Csa01g01861 Csa-Chr1:15634051 4.06E-24 transposed
Csa01g01861 Csa-Chr1:15634051 Csa02g00244 Csa-Chr2:1638210 0 wgd
Csa01g01861 Csa-Chr1:15634051 Csa04g02646 Csa-Chr4:25830357 8.62E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30741 PF00072 Response_reg 2.50E-25 CL0304 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01861 K14491 - csv:101213687 1323.92