Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g01870 | ATGCAGCCCTGTAGCAGAGAAATGCAATCCCTCAACTCTCTCTTAAACCACTCCCAAATATCTCTCCAAGACCTCCATGCCGACCACCATTTGAATCCCCCACCGCCCCAGATCCCTCCCTCTCACTTCCACCATTTTGATCCCTCCGCCGCTTCCAACGACGACTTCCTCGAACAAATGCTCAACACAATCCCTTCCTGTTCTTGGCCTGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAACCCTCTAGAGATATCTCCGATGATCCTCACCAGAATCACCTCACTGCTACTTCTCCCGCCGCTAAGGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCTGGCTCTGCCGGAAATGGCGTTGCAGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTGGAAATGCCGACTTGGATCGCTCCCAAAACGACGTCGTTGATGGATCCTGTTTCCGCCCACCGAACTCGGGTGGTTCTCTTCAATCGAATAGTTTTGGAGCTCCGGGAAACGTGATGAATCAAACTCCAGGAGGTGGGTCTGCCGGAGTTTCTCAATCTCAACCAAAGCAGAAGGTCAGAGCTCGTAGAGGCCAAGCGACTGACCCACACAGTATTGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTCGTTCCCAATGCAAACAAGACGGATAAAGCTTCGATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGGGGTGCAGCTGCTGTGGCTCCTCTAGTCGCTGACGTCTCCTCTGAGGGTGGGGGTGAGTGCATGCAAGGAAGTGGAGCCCAAGCTGGTGGTCGGAATTCCAACAATAATGGCAACGGCGGAAACCAAACTGCCTCGACCAACGATAGCATGACGGTGACGGAGCAGCAAGTGGCAAAGCTAATGGAGAAAGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGGCTTTGTCTTATGCCCATATCTCTAGCAACTGCGATCTCTACGTCCACCTGTCACTCCAGGAATCCCTTGATGAACGGCGGCGGCGGTGGCGGTGGGAGTCAACATCCCGTGATGGGATCCAACGGTGAAGGGCCATCGTCGCCGAGTATGTCGGTGCTGACTGTGCAATCGACGAGCATGGGGAACGGCTCCGTCAAGGACGCCGCCTCCGTATCAAAGCCGTGA | 1269 | 53.35 | MQPCSREMQSLNSLLNHSQISLQDLHADHHLNPPPPQIPPSHFHHFDPSAASNDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHLTATSPAAKAAVMLQQQLLLSRGMSGSAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSNSFGAPGNVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP* | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15708212 | 15711935 | + | CsaV3_1G028780.1 | Csa01g01870 | 516367 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g01870 | 422 | MobiDBLite | consensus disorder prediction | 288 | 323 | - | - | |
Csa01g01870 | 422 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 208 | 270 | IPR036638 | GO:0046983 | |
Csa01g01870 | 422 | MobiDBLite | consensus disorder prediction | 368 | 422 | - | - | |
Csa01g01870 | 422 | SMART | finulus | 216 | 265 | IPR011598 | GO:0046983 | |
Csa01g01870 | 422 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 210 | 259 | IPR011598 | GO:0046983 | |
Csa01g01870 | 422 | MobiDBLite | consensus disorder prediction | 67 | 83 | - | - | |
Csa01g01870 | 422 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 44 | 374 | - | - | |
Csa01g01870 | 422 | MobiDBLite | consensus disorder prediction | 67 | 98 | - | - | |
Csa01g01870 | 422 | Gene3D | - | 204 | 267 | IPR036638 | GO:0046983 | |
Csa01g01870 | 422 | MobiDBLite | consensus disorder prediction | 161 | 213 | - | - | |
Csa01g01870 | 422 | Pfam | Helix-loop-helix DNA-binding domain | 215 | 260 | IPR011598 | GO:0046983 | |
Csa01g01870 | 422 | MobiDBLite | consensus disorder prediction | 298 | 323 | - | - | |
Csa01g01870 | 422 | MobiDBLite | consensus disorder prediction | 387 | 422 | - | - | |
Csa01g01870 | 422 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 44 | 374 | - | - | |
Csa01g01870 | 422 | MobiDBLite | consensus disorder prediction | 166 | 205 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01870 | Csa-Chr1:15708212 | Csa04g02505 | Csa-Chr4:24884098 | 1.77E-22 | dispersed | |
Csa07g00687 | Csa-Chr7:4913547 | Csa01g01870 | Csa-Chr1:15708212 | 6.05E-21 | dispersed | |
Csa07g01462 | Csa-Chr7:14980031 | Csa01g01870 | Csa-Chr1:15708212 | 1.52E-19 | dispersed | |
Csa07g02038 | Csa-Chr7:19779388 | Csa01g01870 | Csa-Chr1:15708212 | 1.14E-15 | dispersed | |
Csa01g02842 | Csa-Chr1:24945063 | Csa01g01870 | Csa-Chr1:15708212 | 2.00E-62 | transposed | |
Csa02g00267 | Csa-Chr2:1833037 | Csa01g01870 | Csa-Chr1:15708212 | 1.24E-112 | transposed | |
Csa06g02321 | Csa-Chr6:20836169 | Csa01g01870 | Csa-Chr1:15708212 | 4.08E-18 | transposed | |
Csa07g01674 | Csa-Chr7:17195587 | Csa01g01870 | Csa-Chr1:15708212 | 2.80E-60 | transposed | |
Csa01g01870 | Csa-Chr1:15708212 | Csa02g00530 | Csa-Chr2:3725743 | 4.26E-19 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30742 | PF00010 | HLH | 1.60E-09 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g01870 | - | - | csv:101211609 | 779.245 |