Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01870 ATGCAGCCCTGTAGCAGAGAAATGCAATCCCTCAACTCTCTCTTAAACCACTCCCAAATATCTCTCCAAGACCTCCATGCCGACCACCATTTGAATCCCCCACCGCCCCAGATCCCTCCCTCTCACTTCCACCATTTTGATCCCTCCGCCGCTTCCAACGACGACTTCCTCGAACAAATGCTCAACACAATCCCTTCCTGTTCTTGGCCTGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAACCCTCTAGAGATATCTCCGATGATCCTCACCAGAATCACCTCACTGCTACTTCTCCCGCCGCTAAGGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCTGGCTCTGCCGGAAATGGCGTTGCAGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTGGAAATGCCGACTTGGATCGCTCCCAAAACGACGTCGTTGATGGATCCTGTTTCCGCCCACCGAACTCGGGTGGTTCTCTTCAATCGAATAGTTTTGGAGCTCCGGGAAACGTGATGAATCAAACTCCAGGAGGTGGGTCTGCCGGAGTTTCTCAATCTCAACCAAAGCAGAAGGTCAGAGCTCGTAGAGGCCAAGCGACTGACCCACACAGTATTGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTCGTTCCCAATGCAAACAAGACGGATAAAGCTTCGATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGGGGTGCAGCTGCTGTGGCTCCTCTAGTCGCTGACGTCTCCTCTGAGGGTGGGGGTGAGTGCATGCAAGGAAGTGGAGCCCAAGCTGGTGGTCGGAATTCCAACAATAATGGCAACGGCGGAAACCAAACTGCCTCGACCAACGATAGCATGACGGTGACGGAGCAGCAAGTGGCAAAGCTAATGGAGAAAGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGGCTTTGTCTTATGCCCATATCTCTAGCAACTGCGATCTCTACGTCCACCTGTCACTCCAGGAATCCCTTGATGAACGGCGGCGGCGGTGGCGGTGGGAGTCAACATCCCGTGATGGGATCCAACGGTGAAGGGCCATCGTCGCCGAGTATGTCGGTGCTGACTGTGCAATCGACGAGCATGGGGAACGGCTCCGTCAAGGACGCCGCCTCCGTATCAAAGCCGTGA 1269 53.35 MQPCSREMQSLNSLLNHSQISLQDLHADHHLNPPPPQIPPSHFHHFDPSAASNDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHLTATSPAAKAAVMLQQQLLLSRGMSGSAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSNSFGAPGNVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15708212 15711935 + CsaV3_1G028780.1 Csa01g01870 516367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01870 422 MobiDBLite consensus disorder prediction 288 323 - -
Csa01g01870 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 270 IPR036638 GO:0046983
Csa01g01870 422 MobiDBLite consensus disorder prediction 368 422 - -
Csa01g01870 422 SMART finulus 216 265 IPR011598 GO:0046983
Csa01g01870 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Csa01g01870 422 MobiDBLite consensus disorder prediction 67 83 - -
Csa01g01870 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 374 - -
Csa01g01870 422 MobiDBLite consensus disorder prediction 67 98 - -
Csa01g01870 422 Gene3D - 204 267 IPR036638 GO:0046983
Csa01g01870 422 MobiDBLite consensus disorder prediction 161 213 - -
Csa01g01870 422 Pfam Helix-loop-helix DNA-binding domain 215 260 IPR011598 GO:0046983
Csa01g01870 422 MobiDBLite consensus disorder prediction 298 323 - -
Csa01g01870 422 MobiDBLite consensus disorder prediction 387 422 - -
Csa01g01870 422 PANTHER TRANSCRIPTION FACTOR BHLH69 44 374 - -
Csa01g01870 422 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01870 Csa-Chr1:15708212 Csa04g02505 Csa-Chr4:24884098 1.77E-22 dispersed
Csa07g00687 Csa-Chr7:4913547 Csa01g01870 Csa-Chr1:15708212 6.05E-21 dispersed
Csa07g01462 Csa-Chr7:14980031 Csa01g01870 Csa-Chr1:15708212 1.52E-19 dispersed
Csa07g02038 Csa-Chr7:19779388 Csa01g01870 Csa-Chr1:15708212 1.14E-15 dispersed
Csa01g02842 Csa-Chr1:24945063 Csa01g01870 Csa-Chr1:15708212 2.00E-62 transposed
Csa02g00267 Csa-Chr2:1833037 Csa01g01870 Csa-Chr1:15708212 1.24E-112 transposed
Csa06g02321 Csa-Chr6:20836169 Csa01g01870 Csa-Chr1:15708212 4.08E-18 transposed
Csa07g01674 Csa-Chr7:17195587 Csa01g01870 Csa-Chr1:15708212 2.80E-60 transposed
Csa01g01870 Csa-Chr1:15708212 Csa02g00530 Csa-Chr2:3725743 4.26E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30742 PF00010 HLH 1.60E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01870 - - csv:101211609 779.245